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(-) Description

Title :  CRYSTAL STRUCTURE OF PI3K-GAMMA IN COMPLEX WITH QUINOLINE-INDOLINE INHIBITOR 24F
 
Authors :  D. A. Whittington, J. Tang, P. Yakowec
Date :  12 Jun 12  (Deposition) - 24 Oct 12  (Release) - 24 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Inflammation, Cancer, P110, C2 Domain, Leukocytes, Kinase, P85, Phosphotransferase, Transferase-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Gonzalez-Lopez De Turiso, Y. Shin, M. Brown, M. Cardozo, Y. Chen, D. Fong, X. Hao, X. He, K. Henne, Y. L. Hu, M. G. Johnson, T. Kohn, J. Lohman, H. J. Mcbride, L. R. Mcgee, J. C. Medina, D. Metz, K. Miner, D. Mohn, V. Pattaropong, J. Seganish, J. L. Simard, S. Wannberg, D. A. Whittington, G. Yu, T. D. Cushing
Discovery And In Vivo Evaluation Of Dual Pi3K-Beta/Delta Inhibitors
J. Med. Chem. V. 55 7667 2012
PubMed-ID: 22876881  |  Reference-DOI: 10.1021/JM300679U

(-) Compounds

Molecule 1 - PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT GAMMA ISOFORM
    Chains: A
    EC Number: 2.7.1.153, 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: CATALYTIC DOMAIN, UNP RESIDUES 144-1102
    Gene: PIK3CG
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PI3-KINASE SUBUNIT GAMMA, PI3K-GAMMA, PI3KGAMMA, PTDINS-3- KINASE SUBUNIT GAMMA, PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE 110 KDA CATALYTIC SUBUNIT GAMMA, PTDINS-3-KINASE SUBUNIT P110-GAMMA, P110GAMMA, PHOSPHOINOSITIDE-3-KINASE CATALYTIC GAMMA POLYPEPTIDE, SERINE/THREONINE PROTEIN KINASE PIK3CG, P120-PI3K

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1FJY1Ligand/Ion4-[3,3-DIMETHYL-6-(MORPHOLIN-4-YL)-2,3-DIHYDRO-1H-INDOL-1-YL]-7-FLUORO-3-METHYL-2-(PYRIDIN-3-YL)QUINOLINE
2SO43Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:206 , LEU A:207 , TRP A:212 , LYS A:288BINDING SITE FOR RESIDUE SO4 A 1201
2AC2SOFTWARETRP A:576 , ARG A:579 , LYS A:606 , HOH A:1305BINDING SITE FOR RESIDUE SO4 A 1202
3AC3SOFTWARELEU A:657 , PHE A:694 , PHE A:698 , GLN A:846 , ARG A:849BINDING SITE FOR RESIDUE SO4 A 1203
4AC4SOFTWAREMET A:804 , PRO A:810 , TRP A:812 , LYS A:833 , ILE A:879 , GLU A:880 , VAL A:882 , ALA A:885 , THR A:886 , THR A:887 , MET A:953 , ILE A:963 , ASP A:964BINDING SITE FOR RESIDUE FJY A 1204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FJY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FJY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FJY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FJY)

(-) Exons   (0, 0)

(no "Exon" information available for 4FJY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:839
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4fjya1 A:144-321 Phoshoinositide 3-kinase (PI3K)                                                                                                             -d4fjya2 A:352-522 Phoshoinositide 3-kinase (PI3K)                                                                                           d4fjya3 A:526-725 Phoshoinositide 3-kinase (PI3K) helical domain                                                                                                                               d4fjya4 A:726-1088 Phoshoinositide 3-kinase (PI3K), catalytic domain                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhh......eeeeee....eeeeee.....hhhhhh....eeee...........hhhhhhhhhhhhhhh..eeeeee...hhhhhh.....ee.hhh..eeeeeeeeee......eeeeeeeeee..eeeeeee...ee...eeeeeeeeeeeee........eeeeeeee...eeeeeeeee..........eeeeee.......hhhhhh...........eeeeee...ee..........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhh..hhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh......eee..eeeeeeeee.hhhhee.......eeeeeee..........eeeeeee...hhhhhhhhhhhhhhhhhhhhh..........eeeee..eeeee....eeehhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh........eeee....eee.............hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fjy A  144 SEESQAFQRQLTALIGYDVTDVSNVHDDELEFTRRGLVTPRMAEVASRDPKLYAMHPWVTSKPLPEYLWKKIANNCIFIVIHRSTTSQTIKVSPDDTPGAILQSFDFVLRVCGRDEYLVGETPIKNFQWVRHCLKNGEEIHVVLDTPPDPALDEVRKETVSLWDCDRKFRVKIRGIDIPVLDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGKVQLLYYVNLLLIDHRFLLRRGEYVLHMWQISSFNADKLTSATNPDKENSMSISILLDNPIALPKHQVRAEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAYLRGCGTAMLHDFTQQVQVIEMLQKVTLDIKSLSAEDVSSQVISQLKQKLENLQNSQLPESFRVPYDPGLKAGALAIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHIDFGHIERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKNEEDAKKYFLDQIEVCRDKGWTVQFNWFL 1088
                                   153       163       173       183       193       203       213       223       233       243    || 273       283       293       303       313       352       362       372||     386       396       406       416       426       436|      466       476       486 ||    503       513       526      |545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755|      767       777       787       797       807       817       827       837       847       857       867       877       887       897       907       917       927       937       947       957       967||     989       999      1009      1019      1029      1039      1049      1059      1069      1079         
                                                                                                                                  248|                                                 321|                   373|                                                       436|                            488|                       522|    533|                                                                                                                                                                                                                 755|                                                                                                                                                                                                               968|                                                                                                           
                                                                                                                                   269                                                  351                    378                                                        457                             496                        526     543                                                                                                                                                                                                                  758                                                                                                                                                                                                                981
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FJY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FJY)

(-) Gene Ontology  (60, 60)

Asymmetric/Biological Unit(hide GO term definitions)

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  4fjy
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  PK3CG_HUMAN | P48736
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  2.7.1.153
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PK3CG_HUMAN | P48736: 1e8y 1e8z 1he8 2a4z 2a5u 2chw 2chx 2chz 2v4l 3apc 3apd 3apf 3csf 3cst 3dbs 3dpd 3ene 3ibe 3l08 3l13 3l16 3l17 3l54 3lj3 3mjw 3ml8 3ml9 3nzs 3nzu 3oaw 3p2b 3pre 3prz 3ps6 3qaq 3qar 3qjz 3qk0 3r7q 3r7r 3s2a 3sd5 3t8m 3tjp 3tl5 3zvv 3zw3 4anu 4anv 4anw 4anx 4aof 4dk5 4ezj 4ezk 4ezl 4f1s 4fa6 4fad 4fhj 4fhk 4fjz 4flh 4ful 4g11 4gb9 4hle 4hvb 4j6i 4kz0 4kzc 4ps3 4ps7 4ps8 4urk 4wwn 4wwo 4wwp 4xx5 4xz4 5eds 5g2n 5g55 5jha 5jhb 5kae 5t23

(-) Related Entries Specified in the PDB File

4fjz 4flh