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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN PI3K-GAMMA IN COMPLEX WITH AMG511
 
Authors :  D. A. Whittington, J. Tang, P. Yakowec
Date :  14 Jun 12  (Deposition) - 29 Aug 12  (Release) - 03 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  P110, Phosphotransferase, Cancer, P85, Phosphorylation, Transferase- Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. H. Norman, K. L. Andrews, Y. Y. Bo, S. K. Booker, S. Caenepeel, V. J. Cee, N. D. D'Angelo, D. J. Freeman, B. J. Herberich, F. T. Hong, C. L. Jackson, J. Jiang, B. A. Lanman, L. Liu, J. D. Mccarter, E. L. Mullady, N. Nishimura, L. H. Pettus, A. B. Reed, T. S. Miguel, A. L. Smith, M. M. Stec, S. Tadesse, A. Tasker, D. Aidasani, X. Zhu, R. Subramanian, N. A. Tamayo, L. Wang, D. A. Whittington, B. Wu, T. Wu, R. P. Wurz, K. Yang, L. Zalameda, N. Zhang, P. E. Hughes
Selective Class I Phosphoinositide 3-Kinase Inhibitors: Optimization Of A Series Of Pyridyltriazines Leading To The Identification Of A Clinical Candidate, Amg 511.
J. Med. Chem. V. 55 7796 2012
PubMed-ID: 22897589  |  Reference-DOI: 10.1021/JM300846Z

(-) Compounds

Molecule 1 - PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT GAMMA ISOFORM
    ChainsA
    EC Number2.7.1.153, 2.7.11.1
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Cell LineSF9
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    FragmentCATALYTIC DOMAIN, UNP RESIDUES 144-1102
    GenePIK3CG
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPI3-KINASE SUBUNIT GAMMA, PI3K-GAMMA, PI3KGAMMA, PTDINS-3- KINASE SUBUNIT GAMMA, PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE 110 KDA CATALYTIC SUBUNIT GAMMA, PTDINS-3-KINASE SUBUNIT P110-GAMMA, P110GAMMA, PHOSPHOINOSITIDE-3-KINASE CATALYTIC GAMMA POLYPEPTIDE, SERINE/THREONINE PROTEIN KINASE PIK3CG, P120-PI3K

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
114K1Ligand/Ion4-(2-[(5-FLUORO-6-METHOXYPYRIDIN-3-YL)AMINO]-5-{(1R)-1-[4-(METHYLSULFONYL)PIPERAZIN-1-YL]ETHYL}PYRIDIN-3-YL)-6-METHYL-1,3,5-TRIAZIN-2-AMINE
2SO44Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:206 , LEU A:207 , TRP A:212 , LYS A:288 , LYS A:1066BINDING SITE FOR RESIDUE SO4 A 1201
2AC2SOFTWARETRP A:576 , ARG A:579 , LYS A:606BINDING SITE FOR RESIDUE SO4 A 1202
3AC3SOFTWARELEU A:657 , PHE A:694 , PHE A:698 , GLN A:846 , ARG A:849BINDING SITE FOR RESIDUE SO4 A 1203
4AC4SOFTWAREARG A:947 , HIS A:948 , ASN A:951 , TRP A:1086 , LEU A:1090BINDING SITE FOR RESIDUE SO4 A 1204
5AC5SOFTWARELYS A:802 , MET A:804 , ALA A:805 , ILE A:831 , LYS A:833 , ASP A:841 , TYR A:867 , GLU A:880 , ILE A:881 , VAL A:882 , THR A:887 , MET A:953 , ILE A:963 , ASP A:964 , HOH A:1318 , HOH A:1320BINDING SITE FOR RESIDUE 14K A 1205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FLH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:777 -Gln A:778

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FLH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FLH)

(-) Exons   (0, 0)

(no "Exon" information available for 4FLH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:840
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4flha1 A:145-321 Phoshoinositide 3-kinase (PI3K)                                                                                                              d4flha2 A:352-521 Phoshoinositide 3-kinase (PI3K)                                                                                          d4flha3 A:526-725 Phoshoinositide 3-kinase (PI3K) helical domain                                                                                                                            d4flha4 A:726-1092 Phoshoinositide 3-kinase (PI3K), catalytic domain                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhh......eeeeee.....eeeee....hhhhhhhhhhh..eeee...........hhhhhhhhhhhhhh...eeeeee...hhhhhh.....hhhhh..eeeeeeeeee......eeeeeeeeee..eeeeeee...ee...eeeeeeeeeeeee.hhh....eeeeeeeee..eeeeeeeee..........eeeeee.ee....hhhhhh...........eeeeee...........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.....eee..eeeeeeeee.hhhhee.......eeeeeee..........eeeeeee...hhhhhhhhhhhhhhhhhhhhh..........eeeee..eeeee....eeehhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh........eeee....eee..............hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4flh A  145 EESQAFQRQLTALIGYDVTDVSNVHDDELEFTRRGLVTPRMAEVASRDPKLYAMHPWVTSKPLPEYLWKKIANNCIFIVIHRSTTSQTIKVSPDDTPGAILQSFFTDFVLRVCGRDEYLVGETPIKNFQWVRHCLKNGEEIHVVLDTPPDPALDEVRKEVSLWDCDRKFRVKIRGIDIPVLDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGKVQLLYYVNLLLIDHRFLLRRGEYVLHMWQISSFNADKLTSATNPDKENSMSISILLDPIALPKHQEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAYLRGCGTAMLHDFTQQVQVIEMLQKVTLDIKSLSAEDVSSQVISQLKQKLENLQNSQLPESFRVPYDPGLKAGALAIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHIDFGHIKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKNEEDAKKYFLDQIEVCRDKGWTVQFNWFLHLVL 1092
                                   154       164       174       184       194       204       214       224       234       244     ||272       282       292       302       312       352       362       372||     386       396       406       416       426       436|      466       476       486 ||    503       513       527     ||549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749     ||761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961      |982       992      1002      1012      1022      1032      1042      1052      1062      1072      1082      1092
                                                                                                                                   250|                                                 321|                  373|                                                       436|                            488|                      521|    533|                                                                                                                                                                                                              755|                                                                                                                                                                                                               968|                                                                                                                
                                                                                                                                    269                                                  352                   378                                                        457                             496                       526     546                                                                                                                                                                                                               758                                                                                                                                                                                                                980                                                                                                                

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FLH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FLH)

(-) Gene Ontology  (60, 60)

Asymmetric/Biological Unit(hide GO term definitions)

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    Ser A:777 - Gln A:778   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PK3CG_HUMAN | P487361e8y 1e8z 1he8 2a4z 2a5u 2chw 2chx 2chz 2v4l 3apc 3apd 3apf 3csf 3cst 3dbs 3dpd 3ene 3ibe 3l08 3l13 3l16 3l17 3l54 3lj3 3mjw 3ml8 3ml9 3nzs 3nzu 3oaw 3p2b 3pre 3prz 3ps6 3qaq 3qar 3qjz 3qk0 3r7q 3r7r 3s2a 3sd5 3t8m 3tjp 3tl5 3zvv 3zw3 4anu 4anv 4anw 4anx 4aof 4dk5 4ezj 4ezk 4ezl 4f1s 4fa6 4fad 4fhj 4fhk 4fjy 4fjz 4ful 4g11 4gb9 4hle 4hvb 4j6i 4kz0 4kzc 4ps3 4ps7 4ps8 4urk 4wwn 4wwo 4wwp 4xx5 4xz4 5eds 5g2n 5g55 5jha 5jhb 5kae 5t23

(-) Related Entries Specified in the PDB File

4dk5 SAME PROTEIN WITH SIMILAR COMPOUND
4f1s SAME PROTEIN WITH SIMILAR COMPOUND
4fjy
4fjz