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(-) Description

Title :  DISCOVERY OF THIAZOLOBENZOXEPIN PI3-KINASE INHIBITORS THAT SPARE THE PI3-KINASE BETA ISOFORM
 
Authors :  J. M. Murray, L. Rouge, P. Wu
Date :  11 Feb 13  (Deposition) - 28 Aug 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-Sparing, Sbdd, Catalytic Subunit Gamma, Phosphorylation, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. T. Staben, C. Ndubaku, N. Blaquiere, M. Belvin, R. J. Bull, D. Dudley K. Edgar, D. Gray, R. Heald, T. P. Heffron, G. E. Jones, M. Jones, A. Kolesnikov, L. Lee, J. Lesnick, C. Lewis, J. Murray, N. J. Mclean, J. Nonomiya, A. G. Olivero, R. Ord, J. Pang, S. Price, W. W. Prior, L. Rouge, L. Salphati, D. Sampath, J. Wallin, L. Wang, B. Wei, C. Weismann, P. Wu
Discovery Of Thiazolobenzoxepin Pi3-Kinase Inhibitors That Spare The Pi3-Kinase Beta Isoform.
Bioorg. Med. Chem. Lett. V. 23 2606 2013
PubMed-ID: 23540645  |  Reference-DOI: 10.1016/J.BMCL.2013.02.102

(-) Compounds

Molecule 1 - PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT GAMMA ISOFORM
    ChainsA
    EC Number2.7.1.153, 2.7.11.1
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System StrainSF9
    Expression System Taxid7108
    FragmentUNP RESIDUES 144-1102
    GeneP110 GAMMA, PIK3CG
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPI3-KINASE SUBUNIT GAMMA, PI3K-GAMMA, PI3KGAMMA, PTDINS-3- KINASE SUBUNIT GAMMA, PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE 110 KDA CATALYTIC SUBUNIT GAMMA, PTDINS-3-KINASE SUBUNIT P110-GAMMA, P110GAMMA, PHOSPHOINOSITIDE-3-KINASE CATALYTIC GAMMA POLYPEPTIDE, SERINE/THREONINE PROTEIN KINASE PIK3CG, P120-PI3K

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
11JV1Ligand/Ion2-METHYL-1-(4-{2-[1-(2,2,2-TRIFLUOROETHYL)-1H-1,2,4-TRIAZOL-5-YL]-4,5-DIHYDRO[1]BENZOXEPINO[5,4-D][1,3]THIAZOL-8-YL}-1H-PYRAZOL-1-YL)PROPAN-2-OL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:812 , ILE A:831 , LYS A:833 , TYR A:867 , ILE A:879 , GLU A:880 , ILE A:881 , VAL A:882 , LYS A:883 , ASP A:884 , ALA A:885 , ILE A:963 , ASP A:964BINDING SITE FOR RESIDUE 1JV A 1201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J6I)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Val A:759 -Ser A:760
2Asn A:776 -Ser A:777
3Ser A:777 -Gln A:778
4His A:834 -Gly A:835

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J6I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J6I)

(-) Exons   (0, 0)

(no "Exon" information available for 4J6I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:833
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4j6ia1 A:143-321 automated matches                                                                                                                                -d4j6ia2 A:357-522 automated matches                                                                                                    d4j6ia3 A:525-725 automated matches                                                                                                                                                     d4j6ia4 A:726-1087 automated matches                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhh......eeeeee....eeeeee....hhhhhhhhhhh....eeee.....ee....hhhhhhhhhhhhhh...eeeeee...hhhhhh........eeeeeeeeee..........eeeeeeeeee..eeeeeee...ee...eeeeeeeeeeeee........eeeeeee...eeeeee..........eeeeee.ee....hhhhhh...........eeeeee........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh......eee..eeeeeeeee.....ee.......eeeeeee..........eeeeeee..hhhhhhhhhhhhhhhhhhhhhh..........eeeee..eeeee....eeehhhhhh...........hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh........eeee....eee.............hhhhhhhh.......hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4j6i A  143 MSEESQAFQRQLTALIGYDVTDVSNVHDDELEFTRRGLVTPRMAEVASRDPKLYAMHPWVTSKPLPEYLWKKIANNCIFIVIHRSTTSQTIKVSPDDTPGAILQSFFTEQDFVLRVCGRDEYLVGETPIKNFQWVRHCLKNGEEIHVVLDTPPDPALDEVRKEECDRKFRVKIRGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCLLYYVNLLLIDHRFLLRRGEYVLHMWQISGFNADKLTSATNPDKENSMSISILLDNHPIAEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAYLRGCGTAMLHDFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQNSQLPESFRVPYDPGLKAGALAIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHIDFGHIERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKNEEDAKKYFLDQIEVCRDKGWTVQFNWF 1087
                                   152       162       172       182       192       202       212       222       232       242       268       278       288       298       308       318   ||  362       372       382       392       402       412       422       432  ||   466       476       486  ||   503       513       525  ||   552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962     ||984       994      1004      1014      1024      1034      1044      1054      1064      1074      1084   
                                                                                                                                     250|                                                    322|                                                                           435|                          489|                      522|  ||                                                                                                                                                                                                                                                                                                                                                                                                                                   968|                                                                                                          
                                                                                                                                      267                                                     357                                                                            460                           497                       525  ||                                                                                                                                                                                                                                                                                                                                                                                                                                    981                                                                                                          
                                                                                                                                                                                                                                                                                                                                        528|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                                         546                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J6I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J6I)

(-) Gene Ontology  (60, 60)

Asymmetric/Biological Unit(hide GO term definitions)

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    Ser A:777 - Gln A:778   [ RasMol ]  
    Val A:759 - Ser A:760   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PK3CG_HUMAN | P487361e8y 1e8z 1he8 2a4z 2a5u 2chw 2chx 2chz 2v4l 3apc 3apd 3apf 3csf 3cst 3dbs 3dpd 3ene 3ibe 3l08 3l13 3l16 3l17 3l54 3lj3 3mjw 3ml8 3ml9 3nzs 3nzu 3oaw 3p2b 3pre 3prz 3ps6 3qaq 3qar 3qjz 3qk0 3r7q 3r7r 3s2a 3sd5 3t8m 3tjp 3tl5 3zvv 3zw3 4anu 4anv 4anw 4anx 4aof 4dk5 4ezj 4ezk 4ezl 4f1s 4fa6 4fad 4fhj 4fhk 4fjy 4fjz 4flh 4ful 4g11 4gb9 4hle 4hvb 4kz0 4kzc 4ps3 4ps7 4ps8 4urk 4wwn 4wwo 4wwp 4xx5 4xz4 5eds 5g2n 5g55 5jha 5jhb 5kae 5t23

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4J6I)