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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN PI3K-GAMMA IN COMPLEX WITH (S)-N-(1-(7-FLUORO-2-(PYRIDIN-2-YL)QUINOLIN-3-YL)ETHYL)-9H-PURIN-6-AMINE AMG319 INHIBITOR
 
Authors :  D. A. Whittington, J. Tang, P. Yakowec
Date :  11 Nov 14  (Deposition) - 17 Dec 14  (Release) - 28 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Phosphotransfer, Pip2 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. D. Cushing, X. Hao, Y. Shin, K. Andrews, M. Brown, M. Cardozo, Y. Chen J. Duquette, B. Fisher, F. Gonzalez-Lopez De Turiso, X. He, K. R. Henne, Y. L. Hu, R. Hungate, M. G. Johnson, R. C. Kelly, B. Lucas, J. D. Mccarter, L. R. Mcgee, J. C. Medina, T. San Miguel, D. Mohn, V. Pattaropong, L. H. Pettus, A. Reichelt, R. M. Rzasa, J. Seganish, A. S. Tasker, R. C. Wahl, S. Wannberg, D. A. Whittington, J. Whoriskey, G. Yu, L. Zalameda, D. Zhang, D. P. Metz
Discovery And In Vivo Evaluation Of (S)-N-(1-(7-Fluoro-2-(Pyridin-2-Yl)Quinolin-3-Yl)Ethyl) -9H-Purin-6-Amine (Amg319) And Related Pi3K Delta Inhibitor For Inflammation And Autoimmune Disease.
J. Med. Chem. V. 58 480 2015
PubMed-ID: 25469863  |  Reference-DOI: 10.1021/JM501624R

(-) Compounds

Molecule 1 - PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT GAMMA ISOFORM
    Chains: A
    EC Number: 2.7.1.153, 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: PIK3CG
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PTDINS-3-KINASE SUBUNIT GAMMA,PHOSPHATIDYLINOSITOL 4,5- BISPHOSPHATE 3-KINASE 110 KDA CATALYTIC SUBUNIT GAMMA,P110GAMMA, PHOSPHOINOSITIDE-3-KINASE CATALYTIC GAMMA POLYPEPTIDE, SERINE/THREONINE PROTEIN KINASE PIK3CG,P120-PI3K

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
13VC1Ligand/IonN-{(1S)-1-[7-FLUORO-2-(PYRIDIN-2-YL)QUINOLIN-3-YL]ETHYL}-9H-PURIN-6-AMINE
2SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:206 , LEU A:207 , TRP A:212 , LYS A:288binding site for residue SO4 A 1201
2AC2SOFTWARETRP A:576 , ARG A:579 , ILE A:603 , LYS A:606binding site for residue SO4 A 1202
3AC3SOFTWARELYS A:802 , VAL A:803 , MET A:804 , PRO A:810 , TRP A:812 , TYR A:867 , ILE A:879 , GLU A:880 , ILE A:881 , VAL A:882 , ALA A:885 , THR A:886 , MET A:953 , ILE A:963binding site for residue 3VC A 1203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WWN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WWN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WWN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WWN)

(-) Exons   (0, 0)

(no "Exon" information available for 4WWN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:831
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhh......eeeeee....eeeeee...........eeee...........hhhhhhhhhhhhhhh..eeeeee...hhhhhh.....ee.hhh..eeeeeeeeee.....eeeeeeeeee..eeeeeee...ee...eeeeeeeeeeeee.hhh....eeeeeeeee..eeeeeeeee..........eeeeee.ee....hhhhhh...........eeeeee....ee.......hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh....eee..eeeeeeeee.hhhhee.......eeeeeee..........eeeeeee..hhhhhhhhhhhhhhhhhhhhh...........eeeee..eeeee....eeehhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.........eeee....eee.hhhhh........hhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4wwn A  144 SEESQAFQRQLTALIGYDVTDVSNVHDDELEFTRRGLVTPRMAEVASRDPKLYAMHPWVTSKPLPEYLWKKIANNCIFIVIHRSTTSQTIKVSPDDTPGAIDFVLRVCGRDEYLVGETPIKNFQWVRHCLKNGEEIHVVLDTPPDPALDEVRKETVSLWDCDRKFRVKIRGIDIPVLLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGKVQLLYYVNLLLIDHRFLLRRGEYVLHMWQISSFNADKLTSATNPDKENSMSISILLDNHPIALPKHQEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAYLRGCGTAMLHDFTQQVQVIEMLQKVTLDIKSLSDVSSQVISQLKQKLENLQNSQLPESFRVPYDPGLKAGALAIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHIDFGHIKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKNEEDAKKYFLDQIEVCRDKGWTVQFNWFL 1088
                                   153       163       173       183       193       203       213       223       233       243||     277       287       297       307       317   ||  356       366      |381       391       401       411       421       431    || 461       471       481      |498       508       518   ||  530  ||   552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752||     766       776       786       796       806       816       826       836       846       856       866       876       886       896       906       916       926       936       946       956       966 ||    987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087 
                                                                                                                              244|                                                 321|                   373|                                                      436|                            488|                       522|     533|                                                                                                                                                                                                            753|                                                                                                                                                                                                               968|                                                                                                            
                                                                                                                               269                                                  351                    379                                                       457                             496                        525      546                                                                                                                                                                                                             758                                                                                                                                                                                                                980
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WWN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WWN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WWN)

(-) Gene Ontology  (60, 60)

Asymmetric/Biological Unit(hide GO term definitions)

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  4wwn
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  PK3CG_HUMAN | P48736
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PK3CG_HUMAN | P48736: 1e8y 1e8z 1he8 2a4z 2a5u 2chw 2chx 2chz 2v4l 3apc 3apd 3apf 3csf 3cst 3dbs 3dpd 3ene 3ibe 3l08 3l13 3l16 3l17 3l54 3lj3 3mjw 3ml8 3ml9 3nzs 3nzu 3oaw 3p2b 3pre 3prz 3ps6 3qaq 3qar 3qjz 3qk0 3r7q 3r7r 3s2a 3sd5 3t8m 3tjp 3tl5 3zvv 3zw3 4anu 4anv 4anw 4anx 4aof 4dk5 4ezj 4ezk 4ezl 4f1s 4fa6 4fad 4fhj 4fhk 4fjy 4fjz 4flh 4ful 4g11 4gb9 4hle 4hvb 4j6i 4kz0 4kzc 4ps3 4ps7 4ps8 4urk 4wwo 4wwp 4xx5 4xz4 5eds 5g2n 5g55 5jha 5jhb 5kae 5t23

(-) Related Entries Specified in the PDB File

4wwo 4wwp