Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN PI3K-GAMMA IN COMPLEX WITH A PYRIDYL-TRIAZINE-SULFONAMIDE INHIBITOR
 
Authors :  D. A. Whittington, J. Tang, P. Yakowec
Date :  07 May 12  (Deposition) - 08 Aug 12  (Release) - 05 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Phosphotransferase, Lipid Kinase, P85, Transferase-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. P. Wurz, L. Liu, K. Yang, N. Nishimura, Y. Bo, L. H. Pettus, S. Caenepeel, D. J. Freeman, J. D. Mccarter, E. L. Mullady, T. S. Miguel L. Wang, N. Zhang, K. L. Andrews, D. A. Whittington, J. Jiang, R. Subramanian, P. E. Hughes, M. H. Norman
Synthesis And Structure-Activity Relationships Of Dual Pi3K/Mtor Inhibitors Based On A 4-Amino-6-Methyl-1, 3, 5-Triazine Sulfonamide Scaffold.
Bioorg. Med. Chem. Lett. V. 22 5714 2012
PubMed-ID: 22832322  |  Reference-DOI: 10.1016/J.BMCL.2012.06.078

(-) Compounds

Molecule 1 - PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT GAMMA ISOFORM
    Chains: A
    EC Number: 2.7.1.153, 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: P110 CATALYTIC DOMAIN, UNP RESIDUES 144-1102
    Gene: PIK3CG
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PI3-KINASE SUBUNIT GAMMA, PI3K-GAMMA, PI3KGAMMA, PTDINS-3- KINASE SUBUNIT GAMMA, PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE 110 KDA CATALYTIC SUBUNIT GAMMA, PTDINS-3-KINASE SUBUNIT P110-GAMMA, P110GAMMA, PHOSPHOINOSITIDE-3-KINASE CATALYTIC GAMMA POLYPEPTIDE, SERINE/THREONINE PROTEIN KINASE PIK3CG, P120-PI3K

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1F1S1Ligand/IonN-(5-{[3-(4-AMINO-6-METHYL-1,3,5-TRIAZIN-2-YL)-5-(TETRAHYDRO-2H-PYRAN-4-YL)PYRIDIN-2-YL]AMINO}-2-CHLOROPYRIDIN-3-YL)METHANESULFONAMIDE
2SO46Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:206 , LEU A:207 , TRP A:212 , LYS A:288 , LYS A:1066BINDING SITE FOR RESIDUE SO4 A 1201
2AC2SOFTWAREGLU A:546 , TRP A:576 , ARG A:579 , LYS A:606 , HOH A:1319 , HOH A:1320BINDING SITE FOR RESIDUE SO4 A 1202
3AC3SOFTWARELEU A:657 , PHE A:694 , GLN A:846BINDING SITE FOR RESIDUE SO4 A 1203
4AC4SOFTWARELYS A:364 , TRP A:413BINDING SITE FOR RESIDUE SO4 A 1204
5AC5SOFTWAREHIS A:199 , LYS A:689 , ARG A:690 , MET A:728 , ARG A:784 , PRO A:789BINDING SITE FOR RESIDUE SO4 A 1205
6AC6SOFTWAREGLU A:649 , ARG A:687BINDING SITE FOR RESIDUE SO4 A 1206
7AC7SOFTWAREMET A:804 , PRO A:810 , LYS A:833 , TYR A:867 , GLU A:880 , VAL A:882 , THR A:887 , MET A:953 , ILE A:963 , ASP A:964BINDING SITE FOR RESIDUE F1S A 1207

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F1S)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:777 -Gln A:778

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F1S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F1S)

(-) Exons   (0, 0)

(no "Exon" information available for 4F1S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:834
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4f1sa1 A:147-321 Phoshoinositide 3-kinase (PI3K)                                                                                                          --d4f1sa2 A:352-522 Phoshoinositide 3-kinase (PI3K)                                                                                           d4f1sa3 A:526-725 Phoshoinositide 3-kinase (PI3K) helical domain                                                                                                                             d4f1sa4 A:726-1091 Phoshoinositide 3-kinase (PI3K), catalytic domain                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhh......eeeeee.......eee....hhhhhhh....eeee.....ee....hhhhhhhhhhhhhhh..eeeeee...hhhhhh.......hhhhh..eeeeeeeeee......eeeeeeeeee..eeeeeee...ee...eeeeeeeeeeeee........eeeeeeeee..eeeeeeeee..........eeeeee.ee....hhhhhh...........eeeeee.............hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhh..hhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.......eee..eeeeeeeee.hhhhee.......eeeeeee..........eeeeeee...hhhhhhhhhhhhhhhhhhhhh..........eeeee..eeeee....eeehhhhhhhhh......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhh.eeee....eee............hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4f1s A  147 SQAFQRQLTALIGYDVTDVSNVHDDELEFTRRGLVTPRMAEVASRDPKLYAMHPWVTSKPLPEYLWKKIANNCIFIVIHRSTTSQTIKVSPDDTPGAILQSFDFVLRVCGRDEYLVGETPIKNFQWVRHCLKNGEEIHVVLDTPPDPALDEVRKEEWVSLWDCDRKFRVKIRGIDIPVLDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGKVQLLYYVNLLLIDHRFLLRRGEYVLHMWQISSFNADKLTSATNPDKENSMSISILLDNPIALPKHQAEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAYLRGCGTAMLHDFTQQVQVIEMLQKVTLDIKSLSADVSSQVISQLKQKLENLQNSQLPESFRVPYDPGLKAGALAIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHIDFGKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKNEEDAKKYFLDQIEVCRDKGWTVQFNWFLHLV 1091
                                   156       166       176       186       196       206       216       226       236       246 ||    276       286       296       306       316      |354       364       378       388       398       408       418       428       458       468       478       488|      505       515      |528    || 549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749    || 762       772       782       792       802       812       822       832       842       852       862       872       882       892    || 904       914       924       934       944       954       964 ||    987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087    
                                                                                                                               248|                                                   323|                  373|                                                       436|                            488|                       522|    533|                                                                                                                                                                                                              754|                                                                                                                                        897|                                                               966|                                                                                                               
                                                                                                                                269                                                    352                   378                                                        457                             496                        526     545                                                                                                                                                                                                               758                                                                                                                                         900                                                                980
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F1S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F1S)

(-) Gene Ontology  (60, 60)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    F1S  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ser A:777 - Gln A:778   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4f1s
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PK3CG_HUMAN | P48736
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.7.1.153
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
  2.7.11.1
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  PK3CG_HUMAN | P48736
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PK3CG_HUMAN | P48736: 1e8y 1e8z 1he8 2a4z 2a5u 2chw 2chx 2chz 2v4l 3apc 3apd 3apf 3csf 3cst 3dbs 3dpd 3ene 3ibe 3l08 3l13 3l16 3l17 3l54 3lj3 3mjw 3ml8 3ml9 3nzs 3nzu 3oaw 3p2b 3pre 3prz 3ps6 3qaq 3qar 3qjz 3qk0 3r7q 3r7r 3s2a 3sd5 3t8m 3tjp 3tl5 3zvv 3zw3 4anu 4anv 4anw 4anx 4aof 4dk5 4ezj 4ezk 4ezl 4fa6 4fad 4fhj 4fhk 4fjy 4fjz 4flh 4ful 4g11 4gb9 4hle 4hvb 4j6i 4kz0 4kzc 4ps3 4ps7 4ps8 4urk 4wwn 4wwo 4wwp 4xx5 4xz4 5eds 5g2n 5g55 5jha 5jhb 5kae 5t23

(-) Related Entries Specified in the PDB File

4dk5 STRUCTURE OF RELATED COMPOUND IN PI3K-GAMMA