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(-) Description

Title :  ATOMIC STRUCTURES OF THE RAPAMYCIN ANALOGS IN COMPLEX WITH BOTH HUMAN FKBP12 AND FRB DOMAIN OF FRAP
 
Authors :  J. Liang, J. Clardy
Date :  06 May 99  (Deposition) - 13 Sep 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Fkbp12, Frap, Rapamycin, Complex, Gene Therapy, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Liang, J. Choi, J. Clardy
Refined Structure Of The Fkbp12-Rapamycin-Frb Ternary Complex At 2. 2 A Resolution.
Acta Crystallogr. , Sect. D V. 55 736 1999
PubMed-ID: 10089303  |  Reference-DOI: 10.1107/S0907444998014747
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FK506-BINDING PROTEIN
    Chains: A
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-3X
    Expression System Strain: BL21 (DE3) (NOVAGEN)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: HUMAN HIPPOCAMPAL CDNA LIBRARY SOURCE 8 (CLONTECH, PALO ALTO, CA)
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Strain: BL21 (DE3) (NOVAGEN)
    Synonym: FKBP12
 
Molecule 2 - FKBP12-RAPAMYCIN ASSOCIATED PROTEIN
    Chains: B
    Fragment: FRB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FRAP

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ARD1Ligand/IonC15-(R)-METHYLTHIENYL RAPAMYCIN

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:26 , PHE A:36 , ASP A:37 , ARG A:42 , PHE A:46 , GLN A:53 , GLU A:54 , VAL A:55 , ILE A:56 , TRP A:59 , TYR A:82 , ILE A:91 , PHE A:99 , LEU B:120 , SER B:124 , PHE B:128 , THR B:187 , TYR B:194 , PHE B:197BINDING SITE FOR RESIDUE ARD A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FAP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FAP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FAP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FAP)

(-) Exons   (0, 0)

(no "Exon" information available for 4FAP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains d4fapa_ A: FK-506 binding protein (FKBP12), an immunophilin                                                 SCOP domains
               CATH domains 4fapA00 A:1-107  [code=3.10.50.40, no name defined]                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee............eeeeeeeeee....eeeehhhh...eeee.......hhhhhhhhh.....eeeeee.hhh................eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 4fap A   1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
                                    10        20        30        40        50        60        70        80        90       100       


Chain B from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains d4fapb_ B: FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)         SCOP domains
               CATH domains 4fapB00 B:108-201 pI3/pI4-Kinases family- FKBP_PPIASE_1                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 4fap B 108 VAILWHEMWHEGLEEASRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRRIS 201
                                   117       127       137       147       157       167       177       187       197
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FAP)

(-) Gene Ontology  (175, 181)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FKB1A_HUMAN | P62942: 1a7x 1b6c 1bkf 1bl4 1d6o 1d7h 1d7i 1d7j 1eym 1f40 1fap 1fkb 1fkd 1fkf 1fkg 1fkh 1fki 1fkj 1fkr 1fks 1fkt 1j4h 1j4i 1j4r 1nsg 1qpf 1qpl 1tco 2dg3 2dg4 2dg9 2fap 2fke 2nd5 2ppn 2ppo 2ppp 2rse 3fap 3h9r 3mdy 4dh0 4ipx 4n19 4odp 4odq 4odr 5i7p 5i7q
        MTOR_HUMAN | P42345: 1aue 1fap 1nsg 2fap 2gaq 2npu 2rse 3fap 3jbz 4drh 4dri 4drj 4jsn 4jsp 4jsv 4jsx 4jt5 4jt6 5flc 5gpg 5h64

(-) Related Entries Specified in the PDB File

2fap 3fap