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(-) Description

Title :  CRYSTAL STRUCTURE OF MTOR DOCKED INTO EM MAP OF DIMERIC ATM KINASE
 
Authors :  W. C. Y. Lau
Date :  03 Nov 15  (Deposition) - 16 Nov 16  (Release) - 23 Nov 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  28.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Mtor, Pikk, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. C. Lau, Y. Li, Z. Liu, Y. Gao, Q. Zhang, M. S. Huen
Structure Of The Human Dimeric Atm Kinase.
Cell Cycle V. 15 1117 2016
PubMed-ID: 27097373  |  Reference-DOI: 10.1080/15384101.2016.1158362

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE MTOR
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293F
    Expression System Taxid: 9606
    Fragment: C-TERMINAL DOMAIN (UNP RESIDUES 1385-2020, 2119-2549)
    Gene: FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FK506-BINDING PROTEIN 12-RAPAMYCIN COMPLEX-ASSOCIATED PROTEIN 1, FKBP12-RAPAMYCIN COMPLEX-ASSOCIATED PROTEIN, MAMMALIAN TARGET OF RAPAMYCIN, MTOR, MECHANISTIC TARGET OF RAPAMYCIN, RAPAMYCIN AND FKBP12 TARGET 1, RAPAMYCIN TARGET PROTEIN 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
3MGF1Ligand/IonTRIFLUOROMAGNESATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:2167 , LYS A:2187 , ILE A:2237 , GLY A:2238 , TRP A:2239 , VAL A:2240 , THR A:2245 , ILE A:2356 , ASP A:2357 , MG A:2602 , MGF A:2604BINDING SITE FOR RESIDUE ADP A 2601
2AC2SOFTWARESER A:2342 , ASN A:2343 , ASP A:2357 , ADP A:2601 , MGF A:2604BINDING SITE FOR RESIDUE MG A 2602
3AC3SOFTWAREASP A:2357 , MGF A:2604BINDING SITE FOR RESIDUE MG A 2603
4AC4SOFTWAREASP A:2338 , HIS A:2340 , ASN A:2343 , ASP A:2357 , ADP A:2601 , MG A:2602 , MG A:2603BINDING SITE FOR RESIDUE MGF A 2604

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JBZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3JBZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JBZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3JBZ)

(-) Exons   (0, 0)

(no "Exon" information available for 3JBZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:960
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeehhhhhhhhhhh...................eeee..eeee.......ee.eeee....eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhh........eee.....eeee....eeehhhhhhhhhhhh....hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh........eeee.....eee.......hhhhhh...........hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhh..hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3jbz A 1385 ERAAKCRAYAKALHYKELEFQKGPTPAILESLISINNKLQQPEAAAGVLEYAMKHFGELEIQATWYEKLHEWEDALVAYDKKMDTNKDDPELMLGRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLGQWDSMEEYTCMIPRDTHDGAFYRAVLALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAYGAMVSCHMLSELEEVIQYKLVPERREIIRQIWWERLQGCQRIVEDWQKILMVRSLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTVHPQVTYAYMKNMWKSARKIDAFQHMQHFVQTMQQQAQHAIATEDQQHKQELHKLMARCFLKLGEWQLNLQGINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHYKHQNQARDEKKKVTEDLSKTLLMYTVPAVQGFFRSISLSRGNNLQDTLRVLTLWFDYGHWPDVNEALVEGVKAIQIDTWLQVIPQLIARIDTPRPLVGRLIHQLLTDIGRYHPQALIYPLTVASKSTTTARHNAANKILKNMCEHSNTLVQQAMMVSEELIRVATSLELQYVSPKLLMCRDLELAVPGTYDPNQPIIRIQSIAPSLQVITSKQRPRKLTLMGSNGHEFVFLLKGHEDLRQDERVMQLFGLVNTLLANDPTSLRKNLSIQRYAVIPLSTNSGLIGWVPHCDTLHALIRDYREKKKILLNIEHRIMLRMAPDYDHLTLMQKVEVFEHAVNNTAGDDLAKLLWLKSPSSEVWFDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLSGKILHIDFGDCFEVAMTREKFPEKIPFRLTRMLTNAMEVTGLDGNYRITCHTVMEVLREHKDSVMAVLEAFVYDPLLNWRLMDTNTALNKKAIQIINRVRDKLTGRDFSHDDTLDVPTQVELLIKQATSHENLCQCYIGWCPFW 2549
                                  1394      1404      1414      1424      1434      1444      1454      1464      1474      1484      1494      1504      1514      1524      1534      1544      1554      1564      1574      1584      1594      1604      1614      1624      1634      1644      1654      1664      1674      1684      1694      1704      1714      1724      1734      1744      1754      1764      1774      1784      1794      1804      1814|     1876      1886      1896      1906      1916      1926      1936      1946      1956      1966      1976      1986      1996      2006      2016   || 2124      2134      2144      2154      2164      2174      2184      2194      2204      2214      2224      2234      2244      2254      2264      2274      2284      2294      2304      2314      2324      2334      2344      2354      2364      2374      2384      2394      2404      2414      2424      2434 ||   2499      2509      2519      2529      2539      2549
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      1814|                                                                                                                                                     2020|                                                                                                                                                                                                                                                                                                                         2436|                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                       1867                                                                                                                                                      2119                                                                                                                                                                                                                                                                                                                          2492
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JBZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JBZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3JBZ)

(-) Gene Ontology  (137, 137)

Asymmetric/Biological Unit(hide GO term definitions)

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  3jbz
    Family and Domain Information: ProDom | SYSTERS
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Access by UniProt ID/Accession number
  MTOR_HUMAN | P42345
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MTOR_HUMAN | P42345: 1aue 1fap 1nsg 2fap 2gaq 2npu 2rse 3fap 4drh 4dri 4drj 4fap 4jsn 4jsp 4jsv 4jsx 4jt5 4jt6 5flc 5gpg 5h64

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3JBZ)