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(-) Description

Title :  CO-CRYSTAL STRUCTURE OF THE FK506 BINDING DOMAIN OF HUMAN FKBP25, RAPAMYCIN AND THE FRB DOMAIN OF HUMAN MTOR
 
Authors :  H. B. Lee, S. Y. Lee, H. W. Rhee, C. W. Lee
Date :  02 Aug 16  (Deposition) - 12 Oct 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.67
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Complex, Kinase, Isomerase-Transferase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Y. Lee, H. Lee, H. K. Lee, S. W. Lee, S. C. Ha, T. Kwon, J. K. Seo, C. Lee, H. W. Rhee
Proximity-Directed Labeling Reveals A New Rapamycin-Induced Heterodimer Of Fkbp25 And Frb In Live Cells
Acs Cent. Sci. V. 2 506 2016
PubMed-ID: 27610411  |  Reference-DOI: 10.1021/ACSCENTSCI.6B00137

(-) Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP3
    Chains: A
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 109-224
    Gene: FKBP3, FKBP25
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PPIASE FKBP3,25 KDA FK506-BINDING PROTEIN,FKBP-25,FK506- BINDING PROTEIN 3,FKBP-3,IMMUNOPHILIN FKBP25,RAPAMYCIN-SELECTIVE 25 KDA IMMUNOPHILIN,ROTAMASE
 
Molecule 2 - SERINE/THREONINE-PROTEIN KINASE MTOR
    Chains: B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 2021-2112
    Gene: MTOR, FRAP, FRAP1, FRAP2, RAFT1, RAPT1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FK506-BINDING PROTEIN 12-RAPAMYCIN COMPLEX-ASSOCIATED PROTEIN 1,FKBP12-RAPAMYCIN COMPLEX-ASSOCIATED PROTEIN,MAMMALIAN TARGET OF RAPAMYCIN,MTOR,MECHANISTIC TARGET OF RAPAMYCIN,RAPAMYCIN AND FKBP12 TARGET 1,RAPAMYCIN TARGET PROTEIN 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1CAS1Mod. Amino AcidS-(DIMETHYLARSENIC)CYSTEINE
2RAP1Ligand/IonRAPAMYCIN IMMUNOSUPPRESSANT DRUG

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:135 , PHE A:145 , ASP A:146 , GLY A:169 , LYS A:170 , VAL A:171 , ILE A:172 , TRP A:175 , TYR A:198 , ILE A:208 , PHE A:216 , HOH A:430 , HOH A:440 , HOH A:441 , HOH A:443 , HOH A:471 , HOH A:499 , LEU B:2031 , GLU B:2032 , SER B:2035 , PHE B:2039 , THR B:2098 , ASP B:2102 , TYR B:2105 , PHE B:2108binding site for residue RAP A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GPG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5GPG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GPG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GPG)

(-) Exons   (0, 0)

(no "Exon" information available for 5GPG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:110
                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee............eeeeeeeee.....eeee.......eeee......hhhhhhhhhhh....eeeeee.hhhh.....hhhhh......eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                5gpg A  108 SPKYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID  224
                                   117       127       137       147  ||   164       174       184       194       204       214       224
                                                                    150|                                                                  
                                                                     158                                                                  


Chain B from PDB  Type:PROTEIN  Length:93
                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                5gpg B 2020 SILWHEMWHEGLEEASRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWcRKYMKSGNVKDLTQAWDLYYHVFRRIS 2112
                                  2029      2039      2049      2059      2069      2079     |2089      2099      2109   
                                                                                          2085-CAS
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GPG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GPG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GPG)

(-) Gene Ontology  (144, 147)

Asymmetric/Biological Unit(hide GO term definitions)

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  5gpg
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  FKBP3_HUMAN | Q00688
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FKBP3_HUMAN | Q00688: 1pbk 2kfv 2mph 5d75
        MTOR_HUMAN | P42345: 1aue 1fap 1nsg 2fap 2gaq 2npu 2rse 3fap 3jbz 4drh 4dri 4drj 4fap 4jsn 4jsp 4jsv 4jsx 4jt5 4jt6 5flc 5h64

(-) Related Entries Specified in the PDB File

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