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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SPOP BTB DOMAIN COMPLEXED WITH THE CUL3 N-TERMINAL DOMAIN
 
Authors :  G. G. Prive, W. J. Errington
Date :  16 Apr 12  (Deposition) - 30 May 12  (Release) - 09 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A,B  (1x)
Biol. Unit 3:  C,D  (1x)
Keywords :  E3 Ubiquitin Ligase, Nucleus, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. J. Errington, M. Q. Khan, S. A. Bueler, J. L. Rubinstein, A. Chakrabartty, G. G. Prive
Adaptor Protein Self-Assembly Drives The Control Of A Cullin-Ring Ubiquitin Ligase.
Structure V. 20 1141 2012
PubMed-ID: 22632832  |  Reference-DOI: 10.1016/J.STR.2012.04.009

(-) Compounds

Molecule 1 - SPECKLE-TYPE POZ PROTEIN
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET32A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: BTB DOMAIN FROM SPOP, UNP RESIDUES 177-319
    Gene: SPOP
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HIB HOMOLOG 1, ROADKILL HOMOLOG 1
 
Molecule 2 - CULLIN-3
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET32A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN FROM CUL3, UNP RESIDUE 20-381
    Gene: CUL3, KIAA0617
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CUL-3

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD
Biological Unit 2 (1x): AB  
Biological Unit 3 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 36)

Asymmetric Unit (1, 36)
No.NameCountTypeFull Name
1MSE36Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 36)
No.NameCountTypeFull Name
1MSE36Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 18)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 18)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4EOZ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EOZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EOZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EOZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EOZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4EOZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhh....eeeee..eeeeehhhhhhhhhhhhhhhhhh.hhhhhhheeee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4eoz A 179 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDA 292
                                   188       198       208       218       228       238       248       258       268       278       288    


Chain B from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh....hhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eoz B  24 TmDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTmVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAmVmIRDILmYmDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDmIARERKGEVVDRGAIRNACQmLmILGLEGRSVYEEDFEAPFLEmSAEFFQmESQKFLAENSASVYIKKVEARINEEIERVmHCLDKSTEEPIVKVVERELISKHmKTIVEmENSGLVHmLKNGKTEDLGCmYKLFSRVPNGLKTmCECmSSYLREQG 325
                             |      33        43        53        63|       73        83        93       103       113  | |  123| |    133       143       153       163    |  173       183     | 193       203       213     | 223       233       243     | 253       263       273     | 283   |   293     | 303       313   |   323  
                            25-MSE                                 64-MSE                                             116-MSE   | |                                       168-MSE              189-MSE                212-MSE  |                           249-MSE                 273-MSE |     287-MSE     299-MSE       313-MSE        
                                                                                                                        118-MSE | |                                                              191-MSE                     219-MSE                                                     279-MSE                               317-MSE    
                                                                                                                              124-MSE                                                                                                                                                                                                     
                                                                                                                                126-MSE                                                                                                                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh....eeeee..eeeeehhhhhhhhhhhhhhhhhh.hhhhhhheeee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 4eoz C 180 KVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCS 295
                                   189       199       209       219       229       239       249       259       269       279       289      


Chain D from PDB  Type:PROTEIN  Length:301
                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhh...hhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eoz D  24 TmDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTmVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAmVmIRDILmYmDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDmIARERKGEVVDRGAIRNACQmLmILGLEGRSVYEEDFEAPFLEmSAEFFQmESQKFLAENSASVYIKKVEARINEEIERVmHCLDKSTEEPIVKVVERELISKHmKTIVEmENSGLVHmLKNGKTEDLGCmYKLFSRVPNGLKTmCECmSSYLREQ 324
                             |      33        43        53        63|       73        83        93       103       113  | |  123| |    133       143       153       163    |  173       183     | 193       203       213     | 223       233       243     | 253       263       273     | 283   |   293     | 303       313   |   323 
                            25-MSE                                 64-MSE                                             116-MSE   | |                                       168-MSE              189-MSE                212-MSE  |                           249-MSE                 273-MSE |     287-MSE     299-MSE       313-MSE       
                                                                                                                        118-MSE | |                                                              191-MSE                     219-MSE                                                     279-MSE                               317-MSE   
                                                                                                                              124-MSE                                                                                                                                                                                                    
                                                                                                                                126-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EOZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EOZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EOZ)

(-) Gene Ontology  (56, 63)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CUL3_HUMAN | Q13618: 2myl 2mym 4ap2 4apf 4hxi 5nlb
        SPOP_HUMAN | O43791: 2cr2 3hqh 3hqi 3hql 3hqm 3hsv 3htm 3hu6 3ivb 3ivq 3ivv 4hs2 4j8z 4o1v

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