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(-) Description

Title :  HUMAN TTK IN COMPLEX WITH A DYRK1B INHIBITOR
 
Authors :  J. E. Debreczeni, J. G. Kettle, P. Ballard, C. Bardelle, S. Butterworth N. Colclough, S. Crichlow, G. Fairley, S. Fillery, M. A. Graham, L. Goo S. Guichard, K. Hudson, A. Mahmood, J. Vincent, R. A. Ward, D. Whittake
Date :  12 May 14  (Deposition) - 22 Apr 15  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Oncology (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. G. Kettle, P. Ballard, C. Bardelle, M. Cockerill, N. Colclough, S. E. Critchlow, J. E. Debreczeni, G. Fairley, S. Fillery, M. A. Graham L. Goodwin, S. Guichard, K. Hudson, R. A. Ward, D. Whittaker
Discovery And Optimization Of A Novel Series Of Dyrk1B Kinase Inhibitors To Explore A Mek Resistance Hypothesis.
J. Med. Chem. V. 58 2834 2015
PubMed-ID: 25738750  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00098

(-) Compounds

Molecule 1 - DUAL SPECIFICITY PROTEIN KINASE TTK
    Chains: A
    EC Number: 2.7.12.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: KINASE DOMAIN, RESIDUES 512-795
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE, PYT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1DYK1Ligand/IonN-{2-METHOXY-4-[(1-METHYLPIPERIDIN-4-YL)OXY]PHENYL}-4-(1H-PYRROLO[2,3-C]PYRIDIN-3-YL)PYRIMIDIN-2-AMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:531 , ALA A:551 , LYS A:553 , GLU A:603 , GLY A:605 , ASN A:606 , ILE A:607 , ASP A:608 , SER A:611 , LEU A:654 , ILE A:663BINDING SITE FOR RESIDUE DYK A1794

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D2S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4D2S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D2S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D2S)

(-) Exons   (0, 0)

(no "Exon" information available for 4D2S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeeeeeeeeeee..eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhhh........eeeeee...eeeeee....eehhhhhhh..hhhhhhhhhhhhhhhhhhhhh........hhh.eeee..eeee...........hhhhhhh..hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...........hhhhhhhhhhhh........hhhhhh.hhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d2s A 513 AANECISVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIATVNYMPPEAIKDMSPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQI 793
                                   522       532       542       552       562       572       582       592       602       612   ||  624       634       644       654       664   ||  691      |714       724       734       744       754       764       774       784         
                                                                                                                                 616|                                              668|         698|                                                                                 
                                                                                                                                  619                                               686          712
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D2S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D2S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D2S)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  TTK_HUMAN | P33981
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  2.7.12.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TTK_HUMAN | P33981: 2x9e 2zmc 2zmd 3cek 3dbq 3gfw 3h9f 3hmn 3hmo 3hmp 3vqu 3w1f 3wyx 3wyy 3wzj 3wzk 4b94 4bhz 4bi0 4bi1 4bi2 4c4e 4c4f 4c4g 4c4h 4c4i 4c4j 4cv8 4cv9 4cva 4h7x 4h7y 4js8 4jt3 4o6l 4zeg 5ap0 5ap1 5ap2 5ap3 5ap4 5ap5 5ap6 5ap7 5eh0 5ehl 5eho 5ehy 5ei2 5ei6 5ei8 5ljj 5n7v 5n84 5n87 5n93 5n9s 5na0 5nad

(-) Related Entries Specified in the PDB File

4d2r HUMAN IGF IN COMPLEX WITH A DYRK1B INHIBITOR