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(-) Description

Title :  HUMAN IGF IN COMPLEX WITH A DYRK1B INHIBITOR
 
Authors :  J. E. Debreczeni, J. G. Kettle, P. Ballard, C. Bardelle, S. Butterworth N. Colclough, S. Crichlow, G. Fairley, S. Fillery, M. A. Graham, L. Goo S. Guichard, K. Hudson, A. Mahmood, J. Vincent, R. A. Ward, D. Whittake
Date :  12 May 14  (Deposition) - 22 Apr 15  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Kinase, Inhibitor, Oncology (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. G. Kettle, P. Ballard, C. Bardelle, M. Cockerill, N. Colclough, S. E. Critchlow, J. E. Debreczeni, G. Fairley, S. Fillery, M. A. Graham L. Goodwin, S. Guichard, K. Hudson, R. A. Ward, D. Whittaker
Discovery And Optimization Of A Novel Series Of Dyrk1B Kinase Inhibitors To Explore A Mek Resistance Hypothesis.
J. Med. Chem. V. 58 2834 2015
PubMed-ID: 25738750  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00098

(-) Compounds

Molecule 1 - INSULIN-LIKE GROWTH FACTOR 1 RECEPTOR
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: KINASE DOMAIN, RESIDUES 985-1286
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: INSULIN-LIKE GROWTH FACTOR RECEPTOR, INSULIN-LIKE GROWTH FAC IGF-I RECEPTOR, CD221, INSULIN-LIKE GROWTH FACTOR 1 RECEPTOR BETA CHAIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2DYK1Ligand/IonN-{2-METHOXY-4-[(1-METHYLPIPERIDIN-4-YL)OXY]PHENYL}-4-(1H-PYRROLO[2,3-C]PYRIDIN-3-YL)PYRIMIDIN-2-AMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:1127 , PHE A:1259 , LEU A:1260 , HOH A:2032 , HOH A:2123 , HOH A:2127BINDING SITE FOR RESIDUE CL A2287
2AC2SOFTWARELEU A:1005 , GLY A:1006 , GLN A:1007 , VAL A:1013 , GLU A:1015 , ALA A:1031 , GLU A:1080 , LEU A:1081 , MET A:1082 , THR A:1083 , GLY A:1085 , MET A:1142 , MET A:1156BINDING SITE FOR RESIDUE DYK A2288

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D2R)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gln A:1073 -Pro A:1074

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D2R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D2R)

(-) Exons   (0, 0)

(no "Exon" information available for 4D2R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhh.eeeeeeeee....eeeeeeeeeee..eeeeeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee......hhhhhhhhee...eehhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh..hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4d2r A  985 DVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYSEENK 1286
                                   994      1004      1014      1024      1034      1044      1054      1064      1074      1084      1094      1104      1114      1124      1134      1144      1154      1164   || 1176      1186      1196      1206      1216      1226      1236      1246      1256      1266      1276      1286
                                                                                                                                                                                                                1168|                                                                                                                   
                                                                                                                                                                                                                 1171
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D2R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D2R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D2R)

(-) Gene Ontology  (41, 41)

Asymmetric/Biological Unit(hide GO term definitions)

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  IGF1R_HUMAN | P08069
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IGF1R_HUMAN | P08069: 1igr 1jqh 1k3a 1m7n 1p4o 2oj9 2zm3 3d94 3f5p 3i81 3lvp 3lw0 3nw5 3nw6 3nw7 3o23 3qqu 4xss 5fxq 5fxr 5fxs 5hzn

(-) Related Entries Specified in the PDB File

4d2s HUMAN TTK IN COMPLEX WITH A DYRK1B INHIBITOR