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(-) Description

Title :  CRYSTAL STRUCTURE OF TTK KINASE DOMAIN WITH AN INHIBITOR: 400740
 
Authors :  W. Qiu, M. Harris-Brandts, M. Feher, D. E. Awrey, N. Y. Chirgadze
Date :  22 Mar 13  (Deposition) - 26 Mar 14  (Release) - 26 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Biol. Unit 3:  A  (4x)
Keywords :  Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Qiu, M. Harris-Brandts, M. Feher, D. E. Awrey, N. Y. Chirgadze
Crystal Structure Of Ttk Kinase Domain With An Inhibitor: 400740
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DUAL SPECIFICITY PROTEIN KINASE TTK
    Chains: A
    EC Number: 2.7.12.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KINASE DOMAIN
    Gene: TTK, MPS1, MPS1L1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE, PYT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A
Biological Unit 3 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
11PH1Ligand/Ion2-PHENYL-N-[3-(3-SULFAMOYLPHENYL)-2H-INDAZOL-5-YL]ACETAMIDE
2EDO10Ligand/Ion1,2-ETHANEDIOL
3PO44Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 15)
No.NameCountTypeFull Name
11PH1Ligand/Ion2-PHENYL-N-[3-(3-SULFAMOYLPHENYL)-2H-INDAZOL-5-YL]ACETAMIDE
2EDO10Ligand/Ion1,2-ETHANEDIOL
3PO44Ligand/IonPHOSPHATE ION
Biological Unit 2 (3, 30)
No.NameCountTypeFull Name
11PH2Ligand/Ion2-PHENYL-N-[3-(3-SULFAMOYLPHENYL)-2H-INDAZOL-5-YL]ACETAMIDE
2EDO20Ligand/Ion1,2-ETHANEDIOL
3PO48Ligand/IonPHOSPHATE ION
Biological Unit 3 (3, 60)
No.NameCountTypeFull Name
11PH4Ligand/Ion2-PHENYL-N-[3-(3-SULFAMOYLPHENYL)-2H-INDAZOL-5-YL]ACETAMIDE
2EDO40Ligand/Ion1,2-ETHANEDIOL
3PO416Ligand/IonPHOSPHATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:595 , HIS A:636 , HIS A:639 , ILE A:782 , PRO A:783 , HOH A:905BINDING SITE FOR RESIDUE PO4 A 801
02AC2SOFTWARELYS A:616 , LYS A:617 , TYR A:726 , GLY A:730BINDING SITE FOR RESIDUE PO4 A 802
03AC3SOFTWARETYR A:554 , TYR A:597 , TYR A:599 , PO4 A:804BINDING SITE FOR RESIDUE PO4 A 803
04AC4SOFTWAREILE A:518 , PHE A:540 , TYR A:554 , TYR A:599 , PO4 A:803BINDING SITE FOR RESIDUE PO4 A 804
05AC5SOFTWARELYS A:529 , SER A:533 , GLY A:534 , VAL A:539 , GLN A:541 , ALA A:551 , LYS A:553 , MET A:602 , GLU A:603 , CYS A:604 , GLY A:605 , ASN A:606 , LEU A:654 , ILE A:663 , EDO A:808BINDING SITE FOR RESIDUE 1PH A 805
06AC6SOFTWAREARG A:523 , TYR A:525 , TYR A:550BINDING SITE FOR RESIDUE EDO A 806
07AC7SOFTWAREASN A:562 , ARG A:569 , GLU A:633 , HIS A:636BINDING SITE FOR RESIDUE EDO A 807
08AC8SOFTWARELEU A:575 , MET A:600 , MET A:602 , ILE A:663 , 1PH A:805 , EDO A:810BINDING SITE FOR RESIDUE EDO A 808
09AC9SOFTWARETYR A:591 , ASP A:766 , HIS A:788 , HOH A:904BINDING SITE FOR RESIDUE EDO A 809
10BC1SOFTWARELYS A:553 , TYR A:568 , EDO A:808BINDING SITE FOR RESIDUE EDO A 810
11BC2SOFTWARELYS A:629 , GLU A:633 , EDO A:815BINDING SITE FOR RESIDUE EDO A 811
12BC3SOFTWARESER A:526 , LEU A:543 , CYS A:604 , ASN A:606 , VAL A:656 , ASP A:657BINDING SITE FOR RESIDUE EDO A 812
13BC4SOFTWAREASP A:590BINDING SITE FOR RESIDUE EDO A 813
14BC5SOFTWARELYS A:538 , TYR A:554 , ASN A:556BINDING SITE FOR RESIDUE EDO A 814
15BC6SOFTWAREVAL A:791 , GLN A:792 , EDO A:811BINDING SITE FOR RESIDUE EDO A 815

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JT3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JT3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JT3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JT3)

(-) Exons   (0, 0)

(no "Exon" information available for 4JT3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains d4jt3a_ A: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeeeeeeeeeee..eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhh.........eeeeee...eeeeee....eehhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeee..eeee...............hhhhhhh...hhhhhhhhhhhhhhhhh........hhhhhhhhhhh...........hhhhhhhhhhhh........hhhhhh.hhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jt3 A 515 NECISVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMGTVNYMPPEAIKDMSPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQ 794
                                   524       534       544       554       564       574       584       594       604       614       624       634       644       654       664      |687       697||     720       730       740       750       760       770       780       790    
                                                                                                                                                                                      671|          698|                                                                                  
                                                                                                                                                                                       685           712
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JT3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JT3)

(-) Gene Ontology  (21, 21)

Asymmetric Unit(hide GO term definitions)

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  4jt3
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  TTK_HUMAN | P33981
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  2.7.12.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TTK_HUMAN | P33981: 2x9e 2zmc 2zmd 3cek 3dbq 3gfw 3h9f 3hmn 3hmo 3hmp 3vqu 3w1f 3wyx 3wyy 3wzj 3wzk 4b94 4bhz 4bi0 4bi1 4bi2 4c4e 4c4f 4c4g 4c4h 4c4i 4c4j 4cv8 4cv9 4cva 4d2s 4h7x 4h7y 4js8 4o6l 4zeg 5ap0 5ap1 5ap2 5ap3 5ap4 5ap5 5ap6 5ap7 5eh0 5ehl 5eho 5ehy 5ei2 5ei6 5ei8 5ljj 5n7v 5n84 5n87 5n93 5n9s 5na0 5nad

(-) Related Entries Specified in the PDB File

4js8 THE SAME PROTEIN WITH A DIFFERENT INHIBITOR: 401348