4AVJ - JenaLib

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Title :   STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN COMPLEX WITH A METHANOL TRIAZOL ETHYL PHENYL ALPHA-D-MANNOSIDE AT 2.1 A RESOLUTION

Authors :   A. Wellens, M. Lahmann, M. Touaibia, J. Vaucher, S. Oscarson, R. Roy, H. J. Bouckaert

Date :   26 May 12 (Deposition) - 27 Jun 12 (Release) - 05 Sep 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Cell Adhesion, Bacterial Adhesin, Type 1 Fimbriae, Urinary Tract Infection, Variable Immunoglobulin Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Wellens, M. Lahmann, M. Touaibia, J. Vaucher, S. Oscarson, R. Roy, H. Remaut, J. Bouckaert
The Tyrosine Gate As A Potential Entropic Lever In The Receptor-Binding Site Of The Bacterial Adhesin Fimh.
Biochemistry V. 51 4790 2012
PubMed-ID: 22657089 | Reference-DOI: 10.1021/BI300251R

Molecule 1 - FIMH
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	C43
	Expression System Vector	:	PET24A
	Expression System Vector Type	:	PLASMID
	Fragment	:	LECTIN DOMAIN, RESIDUES 10-167
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	364106
	Strain	:	UTI89

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	J73	2	Ligand/Ion	METHANOL TRIAZOL ETHYL PHENYL 1O-ALPHA-D-MANNOPYRANOSIDE
2	NI	2	Ligand/Ion	NICKEL (II) ION
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	J73	1	Ligand/Ion	METHANOL TRIAZOL ETHYL PHENYL 1O-ALPHA-D-MANNOPYRANOSIDE
2	NI	-1	Ligand/Ion	NICKEL (II) ION
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	J73	1	Ligand/Ion	METHANOL TRIAZOL ETHYL PHENYL 1O-ALPHA-D-MANNOPYRANOSIDE
2	NI	-1	Ligand/Ion	NICKEL (II) ION
3	SO4	-1	Ligand/Ion	SULFATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:59 , ARG A:60 , LYS B:4	BINDING SITE FOR RESIDUE SO4 A 180
2	AC2	SOFTWARE	PHE A:1 , ILE A:13 , ASN A:46 , ASP A:47 , TYR A:48 , ASP A:54 , GLN A:133 , ASN A:135 , ASP A:140 , HOH A:2001 , HOH A:2175	BINDING SITE FOR RESIDUE J73 A 201
3	AC3	SOFTWARE	HIS A:45 , ASP A:47 , HOH A:2075 , HOH A:2076 , HOH A:2077 , HOH A:2081	BINDING SITE FOR RESIDUE NI A 301
4	AC4	SOFTWARE	VAL A:112 , SER A:113 , HOH A:2191 , TYR B:55 , ARG B:92 , ARG B:132	BINDING SITE FOR RESIDUE SO4 A1160
5	AC5	SOFTWARE	PHE B:1 , ILE B:13 , ASN B:46 , ASP B:47 , TYR B:48 , THR B:51 , ILE B:52 , ASP B:54 , GLN B:133 , ASN B:135 , ASP B:140 , HOH B:2001	BINDING SITE FOR RESIDUE J73 B 201
6	AC6	SOFTWARE	HIS B:45 , ASP B:47 , HOH B:2073 , HOH B:2074 , HOH B:2075 , HOH B:2076	BINDING SITE FOR RESIDUE NI B 301

Asymmetric Unit

No.	Residues
1	A:3	-	A:44
2	B:3	-	B:44

Asymmetric Unit

No.	Residues
1	Phe A:84	-	Pro A:85
2	Phe B:84	-	Pro B:85

(no "SAP(SNP)/Variant" information available for 4AVJ)

(no "PROSITE Motif" information available for 4AVJ)

(no "Exon" information available for 4AVJ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:158
 aligned with A2IC68_ECOLX | A2IC68 from UniProtKB/TrEMBL  Length:227

    Alignment length:158
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159        
         A2IC68_ECOLX    10 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 167
               SCOP domains d4avja_ A: Mannose-specific adhesin FimH                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4avj A   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain A from PDB  Type:PROTEIN  Length:158
 aligned with FIMH_ECOLI | P08191 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:158
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171        
           FIMH_ECOLI    22 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 179
               SCOP domains d4avja_ A: Mannose-specific adhesin FimH                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4avj A   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain B from PDB  Type:PROTEIN  Length:158
 aligned with A2IC68_ECOLX | A2IC68 from UniProtKB/TrEMBL  Length:227

    Alignment length:158
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159        
         A2IC68_ECOLX    10 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 167
               SCOP domains d4avjb_ B: Mannose-specific adhesin FimH                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee.....eeeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4avj B   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain B from PDB  Type:PROTEIN  Length:158
 aligned with FIMH_ECOLI | P08191 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:158
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171        
           FIMH_ECOLI    22 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 179
               SCOP domains d4avjb_ B: Mannose-specific adhesin FimH                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee.....eeeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4avj B   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f (364)

Superfamily: Bacterial adhesins (93)

Family: Pilus subunits (59)

Protein domain: Mannose-specific adhesin FimH (22)

Escherichia coli [TaxId: 562] (22)

1a	d4avja_	A:
1b	d4avjb_	B:

(no "CATH Domain" information available for 4AVJ)

(no "Pfam Domain" information available for 4AVJ)

Asymmetric Unit(hide GO term definitions)

Chain A,B (A2IC68_ECOLX | A2IC68)

biological process
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
	GO:0009289	pilus	A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

Chain A,B (FIMH_ECOLI | P08191)

molecular function
	GO:0005537	mannose binding	Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
	GO:0009289	pilus	A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		J73	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NI	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
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	Cis Peptide Bonds
		Phe A:84 - Pro A:85	[ RasMol ]
		Phe B:84 - Pro B:85	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	4avj
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	FIMH_ECOLI \| P08191
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		Domain Information	:	XDom
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4att	FIMH LECTIN DOMAIN CO-CRYSTAL WITH A ALPHA-D- MANNOSIDE O-LINKED TO A PROPYNYL PARA METHOXY PHENYL
4auj	FIMH LECTIN DOMAIN CO-CRYSTAL WITH A ALPHA-D- MANNOSIDE O-LINKED TO PARA HYDROXYPROPARGYL PHENYL
4auu	CRYSTAL STRUCTURE OF APO FIMH LECTIN DOMAIN AT 1.5 A RESOLUTION
4auy	STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN COMPLEX WITH AN HYDROXYL PROPYNYL PHENYL ALPHA-D-MANNOSIDE AT 2.1 A RESOLUTION
4av0	STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN COMPLEX WITH A METHOXY PHENYL PROPYNYL ALPHA-D-MANNOSIDE AT 2.1 A RESOLUTION
4av4	FIMH LECTIN DOMAIN CO-CRYSTAL WITH A ALPHA-D- MANNOSIDE O-LINKED TO A PROPYNYL PYRIDINE
4av5	STRUCTURE OF A TRICLINIC CRYSTAL OF THE FIMH LECTIN DOMAIN IN COMPLEX WITH A PROPYNYL BIPHENYL ALPHA-D- MANNOSIDE, AT 1.4 A RESOLUTION
4avh	STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN COMPLEX WITH A THIOALKYL ALPHA-D- MANNOSIDE AT 2.1 A RESOLUTION
4avi	STRUCTURE OF THE FIMH LECTIN DOMAIN IN THE TRIGONAL SPACE GROUP, IN COMPLEX WITH A METHYL ESTER OCTYL ALPHA-D-MANNOSIDE AT 2.4 A RESOLUTION
4avk	STRUCTURE OF TRIGONAL FIMH LECTIN DOMAIN CRYSTAL SOAKED WITH AN ALPHA-D-MANNOSIDE O-LINKED TO PROPYNYL PYRIDINE AT 2.4A RESOLUTION

Description

Compounds

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Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Gene Ontology (4, 6)

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