Chain A from PDB Type:PROTEIN Length:204
aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot Length:355
Alignment length:217
45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235 245
DEGS_ECOLI 36 QFDSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 252
SCOP domains d3lgva_ A: automated matches SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...........hhhhhhhhh..eeeeeeee..------.eeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeee.....eeeee......................eeeeeehhhhh..eeeeeeeee.....-------..eee...........eeee....eeeeeeee.............eeeeehhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3lgv A 36 QFDSTDETPASYNLAVRRAAPAVVNVYNRGLN------LEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIG-------NFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 252
45 55 65 | 75 85 95 105 115 125 135 145 155 165 175 | - | 195 205 215 225 235 245
67 74 180 188
Chain B from PDB Type:PROTEIN Length:206
aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot Length:355
Alignment length:214
47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247
DEGS_ECOLI 38 DSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 251
SCOP domains d3lgvb_ B: automated matches SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhh....hhhhhhhhh..eeeeeeeee...--..eeeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeee.....eeeee......................eeeeeehhhhh..eeeeeeeeee.............eee...........eeee....eeeeeeee..------.....eeeeehhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3lgv B 38 DSTDETPASYNLAVRRAAPAVVNVYNRGLNTN--NQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINPGNSGGALVNSLGELMGINTLSFD------TPEGIGFAIPFQLATKIMDKLIRD 251
47 57 67 | | 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 | -| 237 247
69 72 221 228
Chain C from PDB Type:PROTEIN Length:205
aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot Length:355
Alignment length:215
47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247
DEGS_ECOLI 38 DSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 252
SCOP domains d3lgvc_ C: automated matches SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .........hhhhhhhhh..eeeeeeeee.----..eeeeeeeeeee.....eeeee.hhhh...eeeee.....eeeeeeeeee....eeeee......................eeeeeehhhhh..eeeeeeeeee.............eee...........eee.....eeeee....------......eeeeehhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3lgv C 38 DSTDETPASYNLAVRRAAPAVVNVYNRGLN----NQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINPGNSGGALVNSLGELMGINTLSF------ETPEGIGFAIPFQLATKIMDKLIRDG 252
47 57 67 | 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 | 227 237 247
67 72 220 227
Chain D from PDB Type:PROTEIN Length:203
aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot Length:355
Alignment length:217
48 58 68 78 88 98 108 118 128 138 148 158 168 178 188 198 208 218 228 238 248
DEGS_ECOLI 39 STDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 255
SCOP domains d3lgvd_ D: automated matches SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhhhhhhh..eeeeeeeee.......eeeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeeee....eeeeee.....................eeeeeehhhhh..eeeeeeeeeeee..------..eeee...........eeee....eeeeeeee.--------....eeeeehhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3lgv D 39 STDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIG------QNFLQTDASINPGNSGGALVNSLGELMGINTLSF--------PEGIGFAIPFQLATKIMDKLIRDGRVI 255
48 58 68 78 88 98 108 118 128 138 148 158 168 178 | 188 198 208 218 | -| 238 248
180 187 220 229
Chain E from PDB Type:PROTEIN Length:195
aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot Length:355
Alignment length:215
46 56 66 76 86 96 106 116 126 136 146 156 166 176 186 196 206 216 226 236 246
DEGS_ECOLI 37 FDSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 251
SCOP domains d3lgve_ E: automated matches SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..........hhhhhhhhh..eeeeeee...-------.eeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeeee....eeeeee.....................eeeeeehhhhh..eeeeeeeeeeee.--------.eeee...........eeee....eeeeeeee...-----.....eeeeehhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3lgv E 37 FDSTDETPASYNLAVRRAAPAVVNVYNRGLN-------EIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRI--------NFLQTDASINPGNSGGALVNSLGELMGINTLSFDK-----TPEGIGFAIPFQLATKIMDKLIRD 251
46 56 66| 76 86 96 106 116 126 136 146 156 166 176 | - | 196 206 216 | - | 236 246
67 75 179 188 222 228
Chain F from PDB Type:PROTEIN Length:207
aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot Length:355
Alignment length:213
48 58 68 78 88 98 108 118 128 138 148 158 168 178 188 198 208 218 228 238 248
DEGS_ECOLI 39 STDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 251
SCOP domains d3lgvf_ F: automated matches SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhhhhhhh..eeeeeeeeee.....eeeeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeee.....eeeee......................eeeeeehhhhh..eeeeeeeeee.............eee...........eeee....eeeee.....------.....eeeeehhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3lgv F 39 STDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINPGNSGGALVNSLGELMGINTLSFD------TPEGIGFAIPFQLATKIMDKLIRD 251
48 58 68 78 88 98 108 118 128 138 148 158 168 178 188 198 208 218 | 228 238 248
221 228
Chain G from PDB Type:PROTEIN Length:200
aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot Length:355
Alignment length:214
47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247
DEGS_ECOLI 38 DSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 251
SCOP domains d3lgvg_ G: automated matche s SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .........hhhhhhhhh..eeeee..---------.....eeeeee.....eeeee.hhhh.....eee.....eee.eeeee.....eeeee......................eeeeeehhhhh..eeeeeeeee..............eee...........eeee....eeeee....-----.......eeeeehhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3lgv G 38 DSTDETPASYNLAVRRAAPAVVNVYNR---------LEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINPGNSGGALVNSLGELMGINTLSF-----GETPEGIGFAIPFQLATKIMDKLIRD 251
47 57 | - | 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 | 227 237 247
64 74 220 226
Chain H from PDB Type:PROTEIN Length:197
aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot Length:355
Alignment length:213
49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249
DEGS_ECOLI 40 TDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 252
SCOP domains d3lgvh_ H: automated mat ches SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .......hhhhhhhhh..eeeee.-----------....eeeeee.....eeeeehhhhh.....eee.....eee.eeeeee....eeeee......................eeeeeehhhhh..eeeeeeeeee.............eee...........eee.....eeeee....-----.......eeeeehhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3lgv H 40 TDETPASYNLAVRRAAPAVVNVYN-----------EIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINPGNSGGALVNSLGELMGINTLSF-----GETPEGIGFAIPFQLATKIMDKLIRDG 252
49 59 | - | 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219| |229 239 249
63 75 220 226
Chain I from PDB Type:PROTEIN Length:193
aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot Length:355
Alignment length:214
47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247
DEGS_ECOLI 38 DSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 251
SCOP domains d3lgvi_ I: automated matche s SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) ------------Trypsin-3lgvI10 I:50-245 --PDZ- Pfam domains (1)
Pfam domains (2) ------------Trypsin-3lgvI11 I:50-245 --PDZ- Pfam domains (2)
Pfam domains (3) ------------Trypsin-3lgvI12 I:50-245 --PDZ- Pfam domains (3)
Pfam domains (4) ------------Trypsin-3lgvI13 I:50-245 --PDZ- Pfam domains (4)
Pfam domains (5) ------------Trypsin-3lgvI14 I:50-245 --PDZ- Pfam domains (5)
Pfam domains (6) ------------Trypsin-3lgvI15 I:50-245 --PDZ- Pfam domains (6)
Pfam domains (7) ------------Trypsin-3lgvI16 I:50-245 --PDZ- Pfam domains (7)
Pfam domains (8) ------------Trypsin-3lgvI17 I:50-245 --PDZ- Pfam domains (8)
Pfam domains (9) ------------Trypsin-3lgvI18 I:50-245 --PDZ- Pfam domains (9)
Sec.struct. author .........hhhhhhhhh..eeeeeee---------....eeeeeee.....eeee.........eeeee.....eee.eeeeee....eeeee......................eeeeeehhhhh..eeeeeeeee....--------..eee..........eeeee....eeeeeeee..----.......eeeeehhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3lgv I 38 DSTDETPASYNLAVRRAAPAVVNVYNR---------LEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRI--------NFLQTDASINPGNSGGALVNSLGELMGINTLSFD----GETPEGIGFAIPFQLATKIMDKLIRD 251
47 57 | - | 77 87 97 107 117 127 137 147 157 167 177 | -| 197 207 217 | 227 237 247
64 74 179 188 221 226
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |