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(-) Description

Title :  DFP MODIFIED DEGS DELTA PDZ
 
Authors :  J. Sohn, R. A. Grant, R. T. Sauer
Date :  19 Sep 07  (Deposition) - 11 Dec 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Keywords :  Dfp Modified Active Site Serine, Hydrolase, Protease, Serine Protease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Sohn, R. A. Grant, R. T. Sauer
Dfp Modified Degs Delta Pdz
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEASE DEGS
    Chains: A, B, C, D, E, F, G, H, I
    EC Number: 3.4.21.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 27-256
    Gene: DEGS, HHOB, HTRH
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit : ABCDEFGHI
Biological Unit 1 (1x): ABC      
Biological Unit 2 (1x):    DEF   
Biological Unit 3 (1x):       GHI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric Unit (1, 9)
No.NameCountTypeFull Name
1MIS9Mod. Amino AcidMONOISOPROPYLPHOSPHORYLSERINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MIS3Mod. Amino AcidMONOISOPROPYLPHOSPHORYLSERINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MIS3Mod. Amino AcidMONOISOPROPYLPHOSPHORYLSERINE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1MIS3Mod. Amino AcidMONOISOPROPYLPHOSPHORYLSERINE

(-) Sites  (0, 0)

(no "Site" information available for 2RCE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RCE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2RCE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RCE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2RCE)

(-) Exons   (0, 0)

(no "Exon" information available for 2RCE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:205
 aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:215
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247     
           DEGS_ECOLI    38 DSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 252
               SCOP domains d2rcea_ A: Stress sensor prote     ase DegS, catalytic domain                                                                                                                                                           SCOP domains
               CATH domains 2rceA01 A:38-141 Trypsin-like      serine proteases                                                     2rceA02 A:142-252 Trypsin-like serine      proteases                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhh..eeeeeeee..-----..eeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeeee....eeeee......................eeeeeehhhhh..eeeeeeeeeeee-----.....eeee...........eeee....eeeeeeee.............eeeeehhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rce A  38 DSTDETPASYNLAVRRAAPAVVNVYNRGLN-----QLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR-----TGRQNFLQTDASINHGNsGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 252
                                    47        57        67     |  77        87        97       107       117       127       137       147       157       167       177|     |187       197   |   207       217       227       237       247     
                                                        67    73                                                                                                      178   184              201-MIS                                               


Chain B from PDB  Type:PROTEIN  Length:213
 aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:216
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246      
           DEGS_ECOLI    37 FDSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 252
               SCOP domains d2rceb_ B: Stress sensor protea   se DegS, catalytic domain                                                                                                                                                              SCOP domains
               CATH domains 2rceB01 B:37-141 Trypsin-like s   erine proteases                                                        2rceB02 B:142-252 Trypsin-like serine proteases                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh....hhhhhhhhh..eeeeeeeee.---...eeeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeeee....eeeee......................eeeeeehhhhh..eeeeeeeeee.............eee...........eeee....eeeeeeee.............eeeeehhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2rce B  37 FDSTDETPASYNLAVRRAAPAVVNVYNRGLN---HNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNsGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 252
                                    46        56        66|   |   76        86        96       106       116       126       136       146       156       166       176       186       196    |  206       216       226       236       246      
                                                         67  71                                                                                                                               201-MIS                                               


Chain C from PDB  Type:PROTEIN  Length:214
 aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:217
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       
           DEGS_ECOLI    37 FDSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 253
               SCOP domains d2rcec_ C: Stress sensor protease DegS, catalytic domain                                                                                                                                                                  SCOP domains
               CATH domains 2rceC01 C:37-141 Trypsin-like serine proteases                                                           2rceC02 C:142-253 Trypsin-like serine proteases                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh..eeeeeeeee.......eeeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeeee....eeeee......................eeeeeehhhhh..eeeeeeeee..............eee...........eeee....eeeeeeee....---......eeeeehhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rce C  37 FDSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNsGGALVNSLGELMGINTLSFDKS---ETPEGIGFAIPFQLATKIMDKLIRDGR 253
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196    |  206       216      |  -|      236       246       
                                                                                                                                                                                              201-MIS               223 227                          


Chain D from PDB  Type:PROTEIN  Length:207
 aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:217
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       
           DEGS_ECOLI    40 TDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIR 256
               SCOP domains d2rced_ D: Stress sensor protease DegS, catalytic domain                                                                                                                                                                  SCOP domains
               CATH domains 2rceD01 D:40-141 Trypsin-like serine proteases                                                        2rceD02 D:142-256 Trypsin-like serine pro     teases                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhh..eeeeeeeee.......eeeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeeee....eeeee......................eeeeeehhhhh..eeeeeeeeeeee....-----.eeee...........eeee....eeeeeeee..-----......eeeeehhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rce D  40 TDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLN-----NFLQTDASINHGNsGGALVNSLGELMGINTLSFD-----ETPEGIGFAIPFQLATKIMDKLIRDGRVIR 256
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179  |    189       199 |     209       219 |     229       239       249       
                                                                                                                                                                        182   188          201-MIS             221   227                             


Chain E from PDB  Type:PROTEIN  Length:203
 aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:215
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246     
           DEGS_ECOLI    37 FDSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 251
               SCOP domains d2rcee_ E: Stress sensor proteas    e DegS, catalytic domain                                                                                                                                                            SCOP domains
               CATH domains 2rceE01 E:37-141 Trypsin-like se    rine proteases                                                       2rceE02 E:142-251 Trypsin-like serine         proteases                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh..eeeeeeeee..----.eeeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeeee....eeeee......................eeeeeehhhhh..eeeeeeeeeeee.--------.eeee...........eeee....eeeeeeee.............eeeeehhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rce E  37 FDSTDETPASYNLAVRRAAPAVVNVYNRGLNT----QLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRI--------NFLQTDASINHGNsGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 251
                                    46        56        66 |    | 76        86        96       106       116       126       136       146       156       166       176  |      - |     196    |  206       216       226       236       246     
                                                          68   73                                                                                                       179      188          201-MIS                                              


Chain F from PDB  Type:PROTEIN  Length:211
 aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:216
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246      
           DEGS_ECOLI    37 FDSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 252
               SCOP domains d2rcef_ F: Stress sensor protease DegS, catalytic domain                                                                                                                                                                 SCOP domains
               CATH domains 2rceF01 F:37-141 Trypsin-like serine proteases                                                           2rceF02 F:142-252 Trypsin-like serine proteases                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh....hhhhhhhhh..eeeeeeeee.......eeeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeeee....eeeee......................eeeeeehhhhh..eeeeeeeeee.............eee...........eeee....eeeeeeee..-----......eeeeehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2rce F  37 FDSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNsGGALVNSLGELMGINTLSFD-----ETPEGIGFAIPFQLATKIMDKLIRDG 252
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196    |  206       216    |    -|      236       246      
                                                                                                                                                                                              201-MIS             221   227                         


Chain G from PDB  Type:PROTEIN  Length:205
 aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:217
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       
           DEGS_ECOLI    37 FDSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 253
               SCOP domains d2rceg_ G: Stress sensor pr          otease DegS, catalytic domain                                                                                                                                                        SCOP domains
               CATH domains 2rceG01 G:37-141 Trypsin-li          ke serine proteases                                                 2rceG02 G:142-253 Trypsin-like serine proteases                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh....hhhhhhhhh..eeeee.----------.....eeeeee.....eeeeehhhhh....eeee.....eeeeeeeeee....eeeee......................eeeeeehhhhh..eeeeeeeee..............eee...........eeee....eeeeeeee...--........eeeeehhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rce G  37 FDSTDETPASYNLAVRRAAPAVVNVYN----------LEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNsGGALVNSLGELMGINTLSFDK--DGETPEGIGFAIPFQLATKIMDKLIRDGR 253
                                    46        56      |  -       |76        86        96       106       116       126       136       146       156       166       176       186       196    |  206       216     | 226       236       246       
                                                     63         74                                                                                                                            201-MIS              222  |                            
                                                                                                                                                                                                                      225                            


Chain H from PDB  Type:PROTEIN  Length:192
 aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:211
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250 
           DEGS_ECOLI    41 DETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 251
               SCOP domains d2rceh_ H: Stress senso             r protease DegS, catalytic domain                                                                                                                                               SCOP domains
               CATH domains 2rceH01 H:41-141 Trypsi             n-like serine proteases                                          2rceH02 H:142-251 Trypsin-like serine proteases                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhh..eeeee.-------------..eeeeee.....eeeeehhhhh....eeee.....eeeeeeeeee....eeeee......................eeeeeehhhhh..eeeeeeeee..............eee...........eeee....eeeeeeee..------.....eeeeehhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rce H  41 DETPASYNLAVRRAAPAVVNVYN-------------RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNsGGALVNSLGELMGINTLSFD------TPEGIGFAIPFQLATKIMDKLIRD 251
                                    50        60  |      -      | 80        90       100       110       120       130       140       150       160       170       180       190       200|      210       220|      230       240       250 
                                                 63            77                                                                                                                         201-MIS             221    228                       


Chain I from PDB  Type:PROTEIN  Length:198
 aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:215
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246     
           DEGS_ECOLI    37 FDSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 251
               SCOP domains d2rcei_ I: Stress sensor protea      se DegS, catalytic domain                                                                                                                                                          SCOP domains
               CATH domains 2rceI01 I:37-141 Trypsin-like s      erine proteases                                                     2rceI02 I:142-251 Trypsin-like serine p      roteases                                                          CATH domains
           Pfam domains (1) -------------Trypsin-2rceI10 I:      50-245                                                                                                                                                                      --PDZ- Pfam domains (1)
           Pfam domains (2) -------------Trypsin-2rceI11 I:      50-245                                                                                                                                                                      --PDZ- Pfam domains (2)
           Pfam domains (3) -------------Trypsin-2rceI12 I:      50-245                                                                                                                                                                      --PDZ- Pfam domains (3)
           Pfam domains (4) -------------Trypsin-2rceI13 I:      50-245                                                                                                                                                                      --PDZ- Pfam domains (4)
           Pfam domains (5) -------------Trypsin-2rceI14 I:      50-245                                                                                                                                                                      --PDZ- Pfam domains (5)
           Pfam domains (6) -------------Trypsin-2rceI15 I:      50-245                                                                                                                                                                      --PDZ- Pfam domains (6)
           Pfam domains (7) -------------Trypsin-2rceI16 I:      50-245                                                                                                                                                                      --PDZ- Pfam domains (7)
           Pfam domains (8) -------------Trypsin-2rceI17 I:      50-245                                                                                                                                                                      --PDZ- Pfam domains (8)
           Pfam domains (9) -------------Trypsin-2rceI18 I:      50-245                                                                                                                                                                      --PDZ- Pfam domains (9)
         Sec.struct. author ..........hhhhhhhhh..eeeeeeee..------.eeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeeee....eeeee......................eeeeeehhhhh..eeeeeeeee.....------...eee...........eeee....eeeeeeee..-----......eeeeehhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rce I  37 FDSTDETPASYNLAVRRAAPAVVNVYNRGLN------LEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIG------QNFLQTDASINHGNsGGALVNSLGELMGINTLSFD-----ETPEGIGFAIPFQLATKIMDKLIRD 251
                                    46        56        66|      |76        86        96       106       116       126       136       146       156       166       176   |     -|      196    |  206       216    |    -|      236       246     
                                                         67     74                                                                                                       180    187           201-MIS             221   227
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 9)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 18)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Beta Barrel (4804)
(-)
Topology: Thrombin, subunit H (1535)
(-)
Homologous Superfamily: Trypsin-like serine proteases (1488)
(-)
Escherichia coli. Organism_taxid: 562. (11)
1a2rceB02B:142-252
1b2rceG02G:142-253
1c2rceC02C:142-253
1d2rceA02A:142-252
1e2rceF02F:142-252
1f2rceD02D:142-256
1g2rceH02H:142-251
1h2rceE02E:142-251
1i2rceI02I:142-251
1j2rceC01C:37-141
1k2rceF01F:37-141
1l2rceB01B:37-141
1m2rceD01D:40-141
1n2rceE01E:37-141
1o2rceA01A:38-141
1p2rceI01I:37-141
1q2rceG01G:37-141
1r2rceH01H:41-141

(-) Pfam Domains  (2, 18)

Asymmetric Unit
(-)
Clan: PDZ-like (184)
(-)
Family: PDZ (172)
(-)
Escherichia coli (strain K12) (21)
1aPDZ-2rceI01I:248-251
1bPDZ-2rceI02I:248-251
1cPDZ-2rceI03I:248-251
1dPDZ-2rceI04I:248-251
1ePDZ-2rceI05I:248-251
1fPDZ-2rceI06I:248-251
1gPDZ-2rceI07I:248-251
1hPDZ-2rceI08I:248-251
1iPDZ-2rceI09I:248-251
(-)
Clan: Peptidase_PA (797)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I   (DEGS_ECOLI | P0AEE3)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0071218    cellular response to misfolded protein    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a misfolded protein stimulus.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0071575    integral component of external side of plasma membrane    The component of the plasma membrane consisting of the gene products that penetrate only the external side of the membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0031226    intrinsic component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030288    outer membrane-bounded periplasmic space    The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DEGS_ECOLI | P0AEE3: 1sot 1soz 1te0 1vcw 2qf0 2qf3 2qgr 2r3u 2r3y 3b8j 3gcn 3gco 3gds 3gdu 3gdv 3lgi 3lgt 3lgu 3lgv 3lgw 3lgy 3lh1 3lh3 4rqy 4rqz 4rr0 4rr1

(-) Related Entries Specified in the PDB File

2qf0 STRUCTURE OF DELTA PDZ TRUNCATION OF THE DEGS PROTEASE
2qf3 STRUCTURE OF DELTA PDZ TRUNCATION OF THE DEGS PROTEASE - CRYSTAL FORM 2
2qgr STRUCTURE OF THE R178A MUTANT OF DELTA PDZ DEGS PROTEASE