Chain A from PDB Type:PROTEIN Length:283
aligned with DEGS_ECO57 | P0AEE4 from UniProtKB/Swiss-Prot Length:355
Alignment length:312
51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351
DEGS_ECO57 42 ETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYPA 353
SCOP domains d1sota2 A:42-254 Stress sensor protease DegS, catalytic domain d1sota1 A: 255-353 Stress sensor protease DegS, C-terminal domain SCOP domains
CATH domains -1sotA01 A:43-145,A:238-254 Trypsin-like serine proteases 1sotA02 A:146-237 Trypsin-like serine proteases 1sotA01 1sotA03 A: 255-353 [code=2.30.42.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .....hhhhhhhhh..eeeeeeee.........eeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeeee....eeeeee.....................eeeeee.......eeeeeeeee.........hhhhheee...........eeee....eeeeee....--------...eeeeehhhhhhhhhhhhhh.....ee......----------------.ee...................ee..........hhhhhhhhhhh....eeee..-----...eeee.ee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ PDB: A:281-326 UniProt: 281-326 --------------------------- PROSITE (2)
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1sot A 42 mTPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVImDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELmGINTLSFD--------EGIGFAIPFQLATKImDKLIRDGRVIRGYIGIGGR----------------GIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETmDQVAEIRPGSVIPVVV-----QLTLQVTIQEYPA 353
| 51 61 71 81 | 91 101 111 121 131 141 151 161 171 181 191 201 211 | 221 231 241 | 251 261 | - 281 291 301 311 321 331 | 341 351
| 85-MSE 213-MSE 221 230 245-MSE 264 281 319-MSE 335 341
42-MSE
Chain A from PDB Type:PROTEIN Length:283
aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot Length:355
Alignment length:312
51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351
DEGS_ECOLI 42 ETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYPA 353
SCOP domains d1sota2 A:42-254 Stress sensor protease DegS, catalytic domain d1sota1 A: 255-353 Stress sensor protease DegS, C-terminal domain SCOP domains
CATH domains -1sotA01 A:43-145,A:238-254 Trypsin-like serine proteases 1sotA02 A:146-237 Trypsin-like serine proteases 1sotA01 1sotA03 A: 255-353 [code=2.30.42.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .....hhhhhhhhh..eeeeeeee.........eeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeeee....eeeeee.....................eeeeee.......eeeeeeeee.........hhhhheee...........eeee....eeeeee....--------...eeeeehhhhhhhhhhhhhh.....ee......----------------.ee...................ee..........hhhhhhhhhhh....eeee..-----...eeee.ee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ PDB: A:281-326 UniProt: 281-326 --------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1sot A 42 mTPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVImDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELmGINTLSFD--------EGIGFAIPFQLATKImDKLIRDGRVIRGYIGIGGR----------------GIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETmDQVAEIRPGSVIPVVV-----QLTLQVTIQEYPA 353
| 51 61 71 81 | 91 101 111 121 131 141 151 161 171 181 191 201 211 | 221 231 241 | 251 261 | - 281 291 301 311 321 331 | 341 351
42-MSE 85-MSE 213-MSE 221 230 245-MSE 264 281 319-MSE 335 341
Chain B from PDB Type:PROTEIN Length:294
aligned with DEGS_ECO57 | P0AEE4 from UniProtKB/Swiss-Prot Length:355
Alignment length:320
355
51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351 | -
DEGS_ECO57 42 ETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYPATN------ -
SCOP domains d1sotb2 B:42-254 Stress sensor protease DegS, catalytic domain d1sotb1 B: 255-353 Stress sensor protease DegS, C-terminal domain -------- SCOP domains
CATH domains -1sotB01 B:43-133 Trypsin-like serine proteases ------------------1sotB02 B:152-237 Trypsin-like serine proteases -----------------1sotB03 B: 255-361 [code=2.30.42.10, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....hhhhhhhhh..eeeeeeee.........eeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeeee....eeeee......................eeeeee.......eeeeeeeee.........hhhhheee...........eeee....eeeeee....-------....eeeeehhhhhhhhhhhhhhh....ee......---------------..ee...................eeeee......hhhhhhhhhhh.....eeeeee.----.eeeeee.ee........... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ PDB: B:281-326 UniProt: 281-326 ----------------------------------- PROSITE (2)
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1sot B 42 mTPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVImDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELmGINTLSFD-------PEGIGFAIPFQLATKImDKLIRDGRVIRGYIGIGGR---------------QGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETmDQVAEIRPGSVIPVVVm----QLTLQVTIQEYPATNHHHHHH 361
| 51 61 71 81 | 91 101 111 121 131 141 151 161 171 181 191 201 211 | 221 231 241 | 251 261 | - 281 291 301 311 321 331 | 341 351 361
42-MSE 85-MSE 213-MSE 221 229 245-MSE 264 280 319-MSE 336-MSE1
Chain B from PDB Type:PROTEIN Length:294
aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot Length:355
Alignment length:320
355
51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351 | -
DEGS_ECOLI 42 ETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYPATN------ -
SCOP domains d1sotb2 B:42-254 Stress sensor protease DegS, catalytic domain d1sotb1 B: 255-353 Stress sensor protease DegS, C-terminal domain -------- SCOP domains
CATH domains -1sotB01 B:43-133 Trypsin-like serine proteases ------------------1sotB02 B:152-237 Trypsin-like serine proteases -----------------1sotB03 B: 255-361 [code=2.30.42.10, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....hhhhhhhhh..eeeeeeee.........eeeeeeeeee.....eeeeehhhhh...eeeee.....eeeeeeeeee....eeeee......................eeeeee.......eeeeeeeee.........hhhhheee...........eeee....eeeeee....-------....eeeeehhhhhhhhhhhhhhh....ee......---------------..ee...................eeeee......hhhhhhhhhhh.....eeeeee.----.eeeeee.ee........... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ PDB: B:281-326 UniProt: 281-326 ----------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1sot B 42 mTPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVImDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELmGINTLSFD-------PEGIGFAIPFQLATKImDKLIRDGRVIRGYIGIGGR---------------QGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETmDQVAEIRPGSVIPVVVm----QLTLQVTIQEYPATNHHHHHH 361
| 51 61 71 81 | 91 101 111 121 131 141 151 161 171 181 191 201 211 | 221 231 241 | 251 261 | - 281 291 301 311 321 331 | 341 351 361
42-MSE 85-MSE 213-MSE 221 229 245-MSE 264 280 319-MSE 336-MSE1
Chain C from PDB Type:PROTEIN Length:281
aligned with DEGS_ECO57 | P0AEE4 from UniProtKB/Swiss-Prot Length:355
Alignment length:313
51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351
DEGS_ECO57 42 ETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYPAT 354
SCOP domains d1sotc2 C:42-254 Stress sensor protease DegS, catalytic domain d1sotc1 C: 255-353 Stress sensor protease DegS, C-terminal domai n - SCOP domains
CATH domains -1sotC01 C:43-145,C:238-254 Trypsin-like serine proteases 1sotC02 C:146-237 Trypsin-like serine proteases 1sotC01 1sotC03 C: 255-354 [code=2.30.42.10, no name defined] CATH domains
Pfam domains (1) --------Trypsin-1sotC04 C:50-245 -----------PDZ_2-1s otC01 C:257-348 ------ Pfam domains (1)
Pfam domains (2) --------Trypsin-1sotC05 C:50-245 -----------PDZ_2-1s otC02 C:257-348 ------ Pfam domains (2)
Pfam domains (3) --------Trypsin-1sotC06 C:50-245 -----------PDZ_2-1s otC03 C:257-348 ------ Pfam domains (3)
Sec.struct. author .....hhhhhhhhh..eeeeee..............eeeeeee.....eeeeehhhhh....eeee.....eeeeeeeeee....eeeee......................eeeeee.......eeeeeeeee.........hhhhheee...........eeee....eeeeee....--------...eeeeehhhhhhhhhhhhhhh............----------------.........................ee..ee...hhhhhhhhh......ee..--------....ee....... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ PDB: C:281-326 UniProt: 281-326 ---------------------------- PROSITE (2)
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1sot C 42 mTPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVImDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELmGINTLSFD--------EGIGFAIPFQLATKImDKLIRDGRVIRGYIGIGGR----------------GIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETmDQVAEIRPGSVIPV--------LTLQVTIQEYPAT 354
| 51 61 71 81 | 91 101 111 121 131 141 151 161 171 181 191 201 211 | 221 231 241 | 251 261 | - 281 291 301 311 321 331 | -| 351
42-MSE 85-MSE 213-MSE 221 230 245-MSE 264 281 319-MSE 333 342
Chain C from PDB Type:PROTEIN Length:281
aligned with DEGS_ECOLI | P0AEE3 from UniProtKB/Swiss-Prot Length:355
Alignment length:313
51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351
DEGS_ECOLI 42 ETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYPAT 354
SCOP domains d1sotc2 C:42-254 Stress sensor protease DegS, catalytic domain d1sotc1 C: 255-353 Stress sensor protease DegS, C-terminal domai n - SCOP domains
CATH domains -1sotC01 C:43-145,C:238-254 Trypsin-like serine proteases 1sotC02 C:146-237 Trypsin-like serine proteases 1sotC01 1sotC03 C: 255-354 [code=2.30.42.10, no name defined] CATH domains
Pfam domains (1) --------Trypsin-1sotC04 C:50-245 -----------PDZ_2-1s otC01 C:257-348 ------ Pfam domains (1)
Pfam domains (2) --------Trypsin-1sotC05 C:50-245 -----------PDZ_2-1s otC02 C:257-348 ------ Pfam domains (2)
Pfam domains (3) --------Trypsin-1sotC06 C:50-245 -----------PDZ_2-1s otC03 C:257-348 ------ Pfam domains (3)
Sec.struct. author .....hhhhhhhhh..eeeeee..............eeeeeee.....eeeeehhhhh....eeee.....eeeeeeeeee....eeeee......................eeeeee.......eeeeeeeee.........hhhhheee...........eeee....eeeeee....--------...eeeeehhhhhhhhhhhhhhh............----------------.........................ee..ee...hhhhhhhhh......ee..--------....ee....... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDZ PDB: C:281-326 UniProt: 281-326 ---------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1sot C 42 mTPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVImDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELmGINTLSFD--------EGIGFAIPFQLATKImDKLIRDGRVIRGYIGIGGR----------------GIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETmDQVAEIRPGSVIPV--------LTLQVTIQEYPAT 354
| 51 61 71 81 | 91 101 111 121 131 141 151 161 171 181 191 201 211 | 221 231 241 | 251 261 | - 281 291 301 311 321 331 | -| 351
42-MSE 85-MSE 213-MSE 221 230 245-MSE 264 281 319-MSE 333 342
Legend: |
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(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |