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Title :   FAEE-FAEG CHAPERONE-MAJOR PILIN COMPLEX OF F4 AD FIMBRIAE

Authors :   I. Van Molle, K. Moonens, A. Garcia-Pino, L. Buts, J. Bouckaert, H. De

Date :   26 Feb 09 (Deposition) - 20 Oct 09 (Release) - 29 Jan 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Immunoglobulin Like Fold, Fimbrium, Chaperone, Immunoglobulin Domain, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. Van Molle, K. Moonens, A. Garcia-Pino, L. Buts, M. De Kerpel, L. Wyns, J. Bouckaert, H. De Greve
Structural And Thermodynamic Characterization Of Pre- And Postpolymerization States In The F4 Fimbrial Subunit Faeg
J. Mol. Biol. V. 394 957 2009
PubMed-ID: 19799915 | Reference-DOI: 10.1016/J.JMB.2009.09.059

Molecule 1 - CHAPERONE PROTEIN FAEE
	Chains	:	B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PEXP55
	Expression System Strain	:	C43(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	FAEE
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Strain	:	C1360-79
	Synonym	:	FAEE

Molecule 2 - K88 FIMBRIAL PROTEIN AD
	Chains	:	D, A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PEXP55
	Expression System Strain	:	C43(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	FAEGNTD
	Gene	:	FAEG
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Strain	:	C1360-79
	Synonym	:	FAEGNTD, K88 PILIN, K88 ANTIGEN

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 14)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	SO4	12	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 7)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 7)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	SO4	6	Ligand/Ion	SULFATE ION

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY B:13 , LYS B:77 , TYR B:111 , PRO B:113 , LYS B:114 , HOH B:247 , HOH B:421	BINDING SITE FOR RESIDUE SO4 B 225
02	AC2	SOFTWARE	ARG B:29 , THR B:30 , PRO B:92	BINDING SITE FOR RESIDUE SO4 B 226
03	AC3	SOFTWARE	ASP B:5 , TYR B:9 , THR B:19 , ILE B:20 , THR B:21	BINDING SITE FOR RESIDUE SO4 B 227
04	AC4	SOFTWARE	ARG B:46 , SER B:72 , ASP B:73 , HOH B:513 , HOH B:602	BINDING SITE FOR RESIDUE SO4 B 228
05	AC5	SOFTWARE	GLU B:178	BINDING SITE FOR RESIDUE SO4 B 229
06	AC6	SOFTWARE	GLY C:13 , LYS C:77 , TYR C:111 , PRO C:113 , LYS C:114 , HOH C:237 , HOH C:628	BINDING SITE FOR RESIDUE SO4 C 225
07	AC7	SOFTWARE	ARG C:29 , THR C:30 , PRO C:92	BINDING SITE FOR RESIDUE SO4 C 226
08	AC8	SOFTWARE	ARG C:46 , ASP C:73 , HOH C:561 , HOH C:641	BINDING SITE FOR RESIDUE SO4 C 227
09	AC9	SOFTWARE	ARG C:136 , GLU C:178	BINDING SITE FOR RESIDUE SO4 C 228
10	BC1	SOFTWARE	ASP C:5 , TYR C:9 , ILE C:20 , THR C:21	BINDING SITE FOR RESIDUE SO4 C 229
11	BC2	SOFTWARE	GLY D:21 , LYS D:47 , PRO D:48 , HOH D:264 , HOH D:274	BINDING SITE FOR RESIDUE SO4 D 254
12	BC3	SOFTWARE	ALA C:3 , VAL C:4 , HOH C:580 , LYS D:13 , TRP D:14 , TYR D:252 , HOH D:582	BINDING SITE FOR RESIDUE GOL D 255
13	BC4	SOFTWARE	GLY A:21 , LYS A:47 , PRO A:48 , HOH A:707 , HOH A:708	BINDING SITE FOR RESIDUE SO4 A 254
14	BC5	SOFTWARE	GLN A:12 , LYS A:13 , TRP A:14 , TYR A:252 , HOH A:599 , ALA B:3 , VAL B:4 , HOH B:235	BINDING SITE FOR RESIDUE GOL A 255

(no "SS Bond" information available for 3GEW)

Asymmetric Unit

No.	Residues
1	Thr B:52	-	Pro B:53
2	Thr C:52	-	Pro C:53
3	Gly D:150	-	Leu D:151

(no "SAP(SNP)/Variant" information available for 3GEW)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PILI_CHAPERONE	PS00635	Gram-negative pili assembly chaperone signature.	FAEE_ECOLX	109-126	2	B:75-92 C:75-92

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PILI_CHAPERONE	PS00635	Gram-negative pili assembly chaperone signature.	FAEE_ECOLX	109-126	1	B:75-92 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PILI_CHAPERONE	PS00635	Gram-negative pili assembly chaperone signature.	FAEE_ECOLX	109-126	1	- C:75-92

(no "Exon" information available for 3GEW)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:215
 aligned with FAEG3_ECOLX | P14191 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:243
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282   
          FAEG3_ECOLX    43 RQKWEWKVGTGLNGFGNVLNDLTNGGTKLTITVTGNKPILLGRTKEAFATPVTSGVDGIPHIAFTDYEGASVELRNPDGETEKGLAYFVLPMKNAEGTKVGSVKVNASYAGALGRGGVTSADGELMSLFAEGSHAIFYGGLPTNVKNSELKGGSAAAARTELFGSLSKNDILGQIQRVNANITSLVNVPGSFNENMAYTDGSVVSVAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYY 285
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.........-.........eeeee....eeeeeeee...ee..------...eeeee.....ee............eeeeeeeee.....eeeeeeeeeeeeeeeeee.....eeeeee...------...............hhhhhhhhhhhhh..hhhhhhhhhhhhh....eeee.-------------.eeeeeeeeee....eeeeee.....--......eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gew A  11 RQKWEWKVGTGLNGFGS-LNDLTNGGTKLTITVTGNKPILLGRTKEAFATP------GIPHIAFTDYEGASVELRNPDGETEKGLAYFVLPMKNAEGTKVGSVKVNASYAGALGRGGVTSADGELMSLFA------FYGGLPTNVKNSELKGGSAAAARTELFGSLSKNDILGQIQRVNANITSLVNV-------------SVVSVAYALGIANGQTIEATFNQAVT--TQWSAPLNVAITYY 253
                                    20      | 30        40        50        60|      |70        80        90       100       110       120       130       140      |150       160       170       180       190       | -         - |     220       230      |240       250   
                                           27 |                              61     68                                                                     140    147                                                198           212                      237  |             
                                             29                                                                                                                                                                                                                240

Chain B from PDB  Type:PROTEIN  Length:199
 aligned with FAEE_ECOLX | P25401 from UniProtKB/Swiss-Prot  Length:258

    Alignment length:207
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       
           FAEE_ECOLX    35 SLAVDQTRYIFRGDKDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASDHLPKDKESVYWLNLQDIPPALEGSGIAVALRTKLKLFYRPKALLEGRKGAEEGISLQSRPDGRTMLVNTTPYIFAIGSLLDGNGKKIATDNGTTQKLLMFMPGDEVQVKGNVVKVDSLNDYGELQTWTINKKKP 241
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeeee.....eeeeeee......eeeeeeeee.........eeee..eeee....eeeeeeee..........eeeeeeeeee..........eeeeeeeeeeeehhhhh....hhhhhheee.-----.eee........eeeee..-..ee..hhhhhhhhh......eee.--...eeeee.....eeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------PILI_CHAPERONE    ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gew B   1 SLAVDQTRYIFRGDKDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASDHLPKDKESVYWLNLQDIPPALEGSGIAVALRTKLKLFYRPKALLEGRKGAEEGISLQS-----TMLVNTTPYIFAIGSLLDG-GKKIATDNGTTQKLLMFMPGDEVQV--NVVKVDSLNDYGELQTWTINKKKP 207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130|     |140       150    | |160       170       180|  |   190       200       
                                                                                                                                                            131   137               155 |                     181  |                       
                                                                                                                                                                                      157                        184

Chain C from PDB  Type:PROTEIN  Length:208
 aligned with FAEE_ECOLX | P25401 from UniProtKB/Swiss-Prot  Length:258

    Alignment length:208
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234        
           FAEE_ECOLX    35 SLAVDQTRYIFRGDKDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASDHLPKDKESVYWLNLQDIPPALEGSGIAVALRTKLKLFYRPKALLEGRKGAEEGISLQSRPDGRTMLVNTTPYIFAIGSLLDGNGKKIATDNGTTQKLLMFMPGDEVQVKGNVVKVDSLNDYGELQTWTINKKKPA 242
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeee.....eeeeeee......eeeeeeee..........eeee..eeee....eeeeeeee..........eeeeeeeeee..........eeeeeeeeeeeehhhhh....hhhhhheeee.....eeee........eeeee.....ee..hhhhhhhhh......eee......eeeee.....eeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------PILI_CHAPERONE    -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gew C   1 SLAVDQTRYIFRGDKDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASDHLPKDKESVYWLNLQDIPPALEGSGIAVALRTKLKLFYRPKALLEGRKGAEEGISLQSRPDGRTMLVNTTPYIFAIGSLLDGNGKKIATDNGTTQKLLMFMPGDEVQVKGNVVKVDSLNDYGELQTWTINKKKPA 208
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain D from PDB  Type:PROTEIN  Length:217
 aligned with FAEG3_ECOLX | P14191 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:242
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283  
          FAEG3_ECOLX    44 QKWEWKVGTGLNGFGNVLNDLTNGGTKLTITVTGNKPILLGRTKEAFATPVTSGVDGIPHIAFTDYEGASVELRNPDGETEKGLAYFVLPMKNAEGTKVGSVKVNASYAGALGRGGVTSADGELMSLFAEGSHAIFYGGLPTNVKNSELKGGSAAAARTELFGSLSKNDILGQIQRVNANITSLVNVPGSFNENMAYTDGSVVSVAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYY 285
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......hhhhhhh......eeeee....eeeeeeee...ee..------...eeeee.....ee............eeeeeeeee.....eeeeeeeeeeeeeeeeee.....eeeeee...------...............hhhhhhhhhhhhh..hhhhhhhhhhhhh....eeee.-------------.eeeeeeeeee....eeeeee.............eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gew D  12 QKWEWKVGTGLNGFGSVLNDLTNGGTKLTITVTGNKPILLGRTKEAFATP------GIPHIAFTDYEGASVELRNPDGETEKGLAYFVLPMKNAEGTKVGSVKVNASYAGALGRGGVTSADGELMSLFA------FYGGLPTNVKNSELKGGSAAAARTELFGSLSKNDILGQIQRVNANITSLVNV-------------SVVSVAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYY 253
                                    21        31        41        51        61      | 71        81        91       101       111       121       131        |-     | 151       161       171       181       191      |  -         -|      221       231       241       251  
                                                                            61     68                                                                     140    147                                                198           212

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3GEW)

(no "CATH Domain" information available for 3GEW)

(no "Pfam Domain" information available for 3GEW)

Asymmetric Unit(hide GO term definitions)

Chain A,D (FAEG3_ECOLX | P14191)

biological process
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
	GO:0009289	pilus	A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

Chain B,C (FAEE_ECOLX | P25401)

biological process
	GO:0071555	cell wall organization	A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
	GO:0061077	chaperone-mediated protein folding	The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone.
	GO:0043711	pilus organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a pilus, a short filamentous structure on a bacterial cell, flagella-like in structure and generally present in many copies.
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric Unit
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	Cis Peptide Bonds
		Gly D:150 - Leu D:151	[ RasMol ]
		Thr B:52 - Pro B:53	[ RasMol ]
		Thr C:52 - Pro C:53	[ RasMol ]

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	FAEG3_ECOLX \| P14191
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UniProtKB/Swiss-Prot
	FAEE_ECOLX \| P25401	:	3f65 3f6i 3f6l 3gfu
	FAEG3_ECOLX \| P14191	:	3gea 3ggh 3hlr 4wei 4weu

2j6g	STRUCTURE OF A PLANT EXPRESSED FAEG
2j6r	STRUCTURE OF A PLANT EXPRESSED FAEG
3f65	STRUCTURE OF THE F4 FIMBRIAL CHAPERONE FAEE
3f6i	STRUCTURE OF THE F4 FIMBRIAL CHAPERONE FAEE
3f6l	STRUCTURE OF THE F4 FIMBRIAL CHAPERONE FAEE
3gea	STRUCTURE OF A DONOR STRAND COMPLEMENTED FAEG MONOMER OF F4 AD FIMBRIAE
3gfu	CHAPERONE-PILIN COMPLEX FAEE-FAEG FOR F4AC5/95 FIMBRIAE
3ggh	DONOR STRAND COMPLEMENTED FAEG OF F4AD FIMBRIAE
3hlr	DONOR STRAND COMPLEMENTED FAEG OF F4AD FIMBRIAE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 14)

Sites (14, 14)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

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Gene Ontology (7, 7)

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