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(-) Description

Title :  DONOR STRAND COMPLEMENTED FAEG OF F4AD FIMBRIAE
 
Authors :  I. Van Molle, K. Moonens, A. Garcia-Pino, L. Buts, J. Bouckaert, H. De
Date :  28 Feb 09  (Deposition) - 20 Oct 09  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.64
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Immunoglobulin Like Fold, Fimbrium, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Van Molle, K. Moonens, A. Garcia-Pino, L. Buts, M. De Kerpel, L. Wyns, J. Bouckaert, H. De Greve
Structural And Thermodynamic Characterization Of Pre- And Postpolymerization States In The F4 Fimbrial Subunit Faeg
J. Mol. Biol. V. 394 957 2009
PubMed-ID: 19799915  |  Reference-DOI: 10.1016/J.JMB.2009.09.059

(-) Compounds

Molecule 1 - K88 FIMBRIAL PROTEIN AD
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEXP167
    Expression System Strain: C43(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FAEG
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Other Details: RESIDUES 2 TO 21 HAVE BEEN REPLACED BY A 6XHIS-TAG
    Strain: C1360-79
    Synonym: K88 PILIN, K88 ANTIGEN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1SO47Ligand/IonSULFATE ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1SO46Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:21 , LYS A:47 , PRO A:48 , HOH A:355 , HOH A:399 , HOH A:710BINDING SITE FOR RESIDUE SO4 A 275
2AC2SOFTWARESER A:164 , LYS A:178 , ASN A:197 , HOH A:497BINDING SITE FOR RESIDUE SO4 A 276
3AC3SOFTWAREASN A:34 , GLY A:35 , HOH A:524BINDING SITE FOR RESIDUE SO4 A 277
4AC4SOFTWAREASN A:179 , HOH A:498 , HOH A:590 , ARG B:85BINDING SITE FOR RESIDUE SO4 A 278
5AC5SOFTWARETRP A:1 , ARG A:53BINDING SITE FOR RESIDUE SO4 A 279
6AC6SOFTWAREASN A:157 , HOH A:556 , LYS B:109 , HOH B:460 , HOH B:600BINDING SITE FOR RESIDUE SO4 A 280
7AC7SOFTWARETHR B:20 , GLY B:21 , ASN B:23 , HOH B:480 , HOH B:574BINDING SITE FOR RESIDUE SO4 B 275

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GGH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Thr A:60 -Pro A:61

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GGH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GGH)

(-) Exons   (0, 0)

(no "Exon" information available for 3GGH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:275
 aligned with FAEG3_ECOLX | P14191 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:286
                                                                                                                                                                                                                                                                                                  285                     
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280    |    -         -      
          FAEG3_ECOLX    21 AWMTGDFNGSVDIGGSITADDYRQKWEWKVGTGLNGFGNVLNDLTNGGTKLTITVTGNKPILLGRTKEAFATPVTSGVDGIPHIAFTDYEGASVELRNPDGETEKGLAYFVLPMKNAEGTKVGSVKVNASYAGALGRGGVTSADGELMSLFAEGSHAIFYGGLPTNVKNSELKGGSAAAARTELFGSLSKNDILGQIQRVNANITSLVNVPGSFNENMAYTDGSVVSVAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYY---------------------   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........-----------......eeeee......eeee.hhh.....eeeee....eeeeeeee...ee..........eeeeee.....ee............eeeeeeeee.....eeeeeeeeeeeeeeeeee.....eeeeeeee......................hhhhhhhhhhhhh..hhhhhhhhhhhhh....eeeeeeeeee.........eeeeeeeeee....eeeeee.......eeee..eeeeeee.........eeeee..eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ggh A   0 MWMTGHHH-----------HHHRQKWEWKVGTGLNGFGSVLNDLTNGGTKLTITVTGNKPILLGRTKEAFATPVTSGVDGIPHIAFTDYEGASVELRNPDGETEKGLAYFVLPMKNAEGTKVGSVKVNASYAGALGRGGVTSADGELMSLFAEGSHAIFYGGLPTNVKNSELKGGSAAAARTELFGSLSKNDILGQIQRVNANITSLVNVPGSFNENMAYTDGSVVSVAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYYDNKQMTGDFNGSVDIGGSITA 274
                                   | -         8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268      
                                   7           8                                                                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:258
 aligned with FAEG3_ECOLX | P14191 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:283
                                                                                                                                                                                                                                                                                                 285                   
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   |     -         -   
          FAEG3_ECOLX    22 WMTGDFNGSVDIGGSITADDYRQKWEWKVGTGLNGFGNVLNDLTNGGTKLTITVTGNKPILLGRTKEAFATPVTSGVDGIPHIAFTDYEGASVELRNPDGETEKGLAYFVLPMKNAEGTKVGSVKVNASYAGALGRGGVTSADGELMSLFAEGSHAIFYGGLPTNVKNSELKGGSAAAARTELFGSLSKNDILGQIQRVNANITSLVNVPGSFNENMAYTDGSVVSVAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYY-------------------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........---------------.eeeee......eeee.hhh.....eeeeee...eeeeeeee.....--------.eeeeeee.....ee............eeeeeeeee.....eeeeeeeeeeeeeeeeee.....eeeeeee.......................hhhhhhhhhhhhh..hhhhhhhhhhh......eeeeeeeee.....--...eeeeeeeeee....eeeeee.......eeee..eeeeeeee....eeeeeee..eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ggh B   1 WMTGHHHH---------------KWEWKVGTGLNGFGSVLNDLTNGGTKLTITVTGNKPILLGRTKEAFA--------GIPHIAFTDYEGASVELRNPDGETEKGLAYFVLPMKNAEGTKVGSVKVNASYAGALGRGGVTSADGELMSLFAEGSHAIFYGGLPTNVKNSELKGGSAAAARTELFGSLSKNDILGQIQRVNANITSLVNVPGSFNENMA--DGSVVSVAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYYDQMTGDFNGSVDIGGSITA 274
                                   | -         -   |    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       | -|      219       229       239       249    || 261       271   
                                   8              13                                            59       68                                                                                                                                        207  |                                         254|                 
                                                                                                                                                                                                                                                      210                                          257
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GGH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3GGH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GGH)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (FAEG3_ECOLX | P14191)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
    GO:0009289    pilus    A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FAEG3_ECOLX | P14191: 3gea 3gew 3hlr 4wei 4weu

(-) Related Entries Specified in the PDB File

2j6g PLANT EXPRESSED FAEG OF F4 AC 5/95 FIMBRIAE
2j6r PLANT EXPRESSED FAEG OF F4 AC GIS26 FIMBRIAE
3f65 STRUCTURE OF THE F4 FIMBRIAL CHAPERONE FAEE
3gea DONOR STRAND COMPLEMENTED FAEG OF F4AD FIMBRIAE
3gew FAEE-FAEG CHAPERONE-MAJOR PILIN COMPLEX FOR F4 AD FIMBRIAE
3gfu FAEE-FAEG CHAPERONE-MAJOR PILIN COMPLEX FOR F4 AC 5/95 FIMBRIAE
3hlr DONOR STRAND COMPLEMENTED FAEG OF F4AD FIMBRIAE