3F6I - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF THE SEMET LABELED F4 FIBRIAL CHAPERONE FAEE

Authors :   I. Van Molle, K. Moonens, L. Buts, A. Garcia-Pino, L. Wyns, H. De Greve, J. Bouckaert

Date :   06 Nov 08 (Deposition) - 19 May 09 (Release) - 19 May 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.79

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Immunoglobulin-Like Fold, Cell Projection, Chaperone, Fimbrium, Immunoglobulin Domain, Periplasm, Plasmid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. Van Molle, K. Moonens, L. Buts, A. Garcia-Pino, S. Panjikar, L. Wyns, H. De Greve, J. Bouckaert
The F4 Fimbrial Chaperone Faee Is Stable As A Monomer That Does Not Require Self-Capping Of Its Pilin-Interactive Surfaces
Acta Crystallogr. , Sect. D V. 65 411 2009
PubMed-ID: 19390146 | Reference-DOI: 10.1107/S0907444909005174
(for further references see the PDB file header)

Molecule 1 - CHAPERONE PROTEIN FAEE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PHD163
	Expression System Strain	:	B834(DE3)
	Expression System Taxid	:	562
	Expression System Vector	:	PBAD
	Expression System Vector Type	:	PLASMID, VECTOR
	Fragment	:	UNP RESIDUES 35-239
	Gene	:	FAEE
	Mutation	:	YES
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Strain	:	C1360-79

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 8)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 3F6I)

(no "SS Bond" information available for 3F6I)

Asymmetric Unit

No.	Residues
1	Thr A:52	-	Pro A:53
2	Asp A:154	-	Gly A:155
3	Gly A:157	-	Lys A:158
4	Arg B:29	-	Thr B:30
5	Thr B:52	-	Pro B:53
6	Glu B:124	-	Glu B:125
7	Glu B:125	-	Gly B:126

(no "SAP(SNP)/Variant" information available for 3F6I)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PILI_CHAPERONE	PS00635	Gram-negative pili assembly chaperone signature.	FAEE_ECOLX	109-126	2	A:75-92 B:75-92

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PILI_CHAPERONE	PS00635	Gram-negative pili assembly chaperone signature.	FAEE_ECOLX	109-126	1	A:75-92 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PILI_CHAPERONE	PS00635	Gram-negative pili assembly chaperone signature.	FAEE_ECOLX	109-126	1	- B:75-92

(no "Exon" information available for 3F6I)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:199
 aligned with FAEE_ECOLX | P25401 from UniProtKB/Swiss-Prot  Length:258

    Alignment length:205
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234     
           FAEE_ECOLX    35 SLAVDQTRYIFRGDKDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASDHLPKDKESVYWLNLQDIPPALEGSGIAVALRTKLKLFYRPKALLEGRKGAEEGISLQSRPDGRTMLVNTTPYIFAIGSLLDGNGKKIATDNGTTQKLLMFMPGDEVQVKGNVVKVDSLNDYGELQTWTINKK 239
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeee....eeeeeeee......eeeeeeee..----....eeee..eeee....eeeeeeee..........eeeeeeeeee.......eeeeeeeeeeeeeee.........hhhhhheeee.....eeee........eeeee.......--hhhhhhhhhhh....eee......eeeee.....eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------PILI_CHAPERONE    ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f6i A   1 SLAVDQTRYIFRGDEDALTITVTNNDKERTFGGQAWVDNI----TRPTFVVTPSFFKVKPNGQQTLRIImASDHLPKDKESVYWLNLQDIPPALEGSGIAVALRTKLKLFYRPKALLEGRKGAEEGISLQSRPDGRTmLVNTTPYIFAIGSLLDGNGKKI--DNGTTQKLLmFmPGDEVQVKGNVVKVDSLNDYGELQTWTINKK 205
                                    10        20        30        40    |   50        60        70        80        90       100       110       120       130       140       150       160  |    170 | |   180       190       200     
                                                                  40   45                       70-MSE                                                             138-MSE               160  |      172-MSE                             
                                                                                                                                                                                            163        174-MSE

Chain B from PDB  Type:PROTEIN  Length:183
 aligned with FAEE_ECOLX | P25401 from UniProtKB/Swiss-Prot  Length:258

    Alignment length:202
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234  
           FAEE_ECOLX    35 SLAVDQTRYIFRGDKDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASDHLPKDKESVYWLNLQDIPPALEGSGIAVALRTKLKLFYRPKALLEGRKGAEEGISLQSRPDGRTMLVNTTPYIFAIGSLLDGNGKKIATDNGTTQKLLMFMPGDEVQVKGNVVKVDSLNDYGELQTWTI 236
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....eeee.....eeeeeee......eeeeeeeee.........eeee..eeee....eeeeeeee..........eeeeeeeeee.......eeeeeeeeeeeeeeehhhhh.............-------.ee........eee.----------.hhhhhhhh......ee...--..eeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------PILI_CHAPERONE    -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f6i B   1 SLAVDQTRYIFRGDEDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIImASDHLPKDKESVYWLNLQDIPPALEGSGIAVALRTKLKLFYRPKALLEGRKGAEEGISLQ-------mLVNTTPYIFAIGSL----------DNGTTQKLLmFmPGDEVQVK--VVKVDSLNDYGELQTWTI 202
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150 |       -  |    170 | |   180 |  |  190       200  
                                                                                                70-MSE                                                     130     138-MSE       152        163      172-MSE   182  |                 
                                                                                                                                                                                                       174-MSE    185

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3F6I)

(no "CATH Domain" information available for 3F6I)

(no "Pfam Domain" information available for 3F6I)

Asymmetric Unit(hide GO term definitions)

Chain A,B (FAEE_ECOLX | P25401)

biological process
	GO:0071555	cell wall organization	A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
	GO:0061077	chaperone-mediated protein folding	The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone.
	GO:0043711	pilus organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a pilus, a short filamentous structure on a bacterial cell, flagella-like in structure and generally present in many copies.
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric Unit
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	Sites
(no "Sites" information available for 3f6i)

	Cis Peptide Bonds
		Arg B:29 - Thr B:30	[ RasMol ]
		Asp A:154 - Gly A:155	[ RasMol ]
		Glu B:124 - Glu B:125	[ RasMol ]
		Glu B:125 - Gly B:126	[ RasMol ]
		Gly A:157 - Lys A:158	[ RasMol ]
		Thr A:52 - Pro A:53	[ RasMol ]
		Thr B:52 - Pro B:53	[ RasMol ]

Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	3f6i
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	FAEE_ECOLX \| P25401	:	3f65 3f6l 3gew 3gfu

3f65	NATIVE STRUCTURE OF THE F4 FIMBRIAL CHAPERONE FAEE
3f6l

Description

Compounds

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Ligands, Modified Residues, Ions (1, 8)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (7, 7)

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