3GFU - JenaLib

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Title :   FAEE-FAEG CHAPERONE-MAJOR PILIN COMPLEX OF F4 AC 5/95 FIMBRIAE

Authors :   I. Van Molle, K. Moonens, A. Garcia-Pino, L. Buts, J. Bouckaert, H. De

Date :   27 Feb 09 (Deposition) - 20 Oct 09 (Release) - 29 Jan 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.99

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: C,D  (1x)
Biol. Unit 2: A,B  (1x)

Keywords :   Immunoglobulin Like Fold, Chaperone, Fimbrium, Immunoglobulin Domain, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. Van Molle, K. Moonens, A. Garcia-Pino, L. Buts, M. De Kerpel, L. Wyns, J. Bouckaert, H. De Greve
Structural And Thermodynamic Characterization Of Pre- And Postpolymerization States In The F4 Fimbrial Subunit Faeg
J. Mol. Biol. V. 394 957 2009
PubMed-ID: 19799915 | Reference-DOI: 10.1016/J.JMB.2009.09.059

Molecule 1 - CHAPERONE PROTEIN FAEE
	Chains	:	C, A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PEXP45
	Expression System Strain	:	C43(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	FAEE
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Strain	:	C1360-79

Molecule 2 - FAEG
	Chains	:	D, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PEXP45
	Expression System Strain	:	C43(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	FAEG
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Other Details	:	RESIDUES 5 TO 21 WERE REPLACED BY 6XHIS-TAG
	Strain	:	ETEC 5/95

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:			C	D
Biological Unit 2 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 11)

No.	Name	Count	Type	Full Name
1	SO4	11	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 5)

No.	Name	Count	Type	Full Name
1	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 6)

No.	Name	Count	Type	Full Name
1	SO4	6	Ligand/Ion	SULFATE ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY C:13 , LYS C:77 , TYR C:111 , LYS C:114 , HOH C:248	BINDING SITE FOR RESIDUE SO4 C 225
02	AC2	SOFTWARE	ARG C:46 , ALA C:71 , SER C:72 , ASP C:73 , HIS C:74 , HOH C:252 , HOH C:265 , HOH C:289	BINDING SITE FOR RESIDUE SO4 C 226
03	AC3	SOFTWARE	ARG C:29 , THR C:30 , PRO C:92	BINDING SITE FOR RESIDUE SO4 C 227
04	AC4	SOFTWARE	TYR C:9 , ILE C:20 , THR C:21 , HOH C:490	BINDING SITE FOR RESIDUE SO4 C 228
05	AC5	SOFTWARE	HIS D:71 , ILE D:72 , PHE D:148 , TYR D:149 , GLY D:150 , GLY D:151 , HOH D:325 , HOH D:469	BINDING SITE FOR RESIDUE SO4 D 252
06	AC6	SOFTWARE	GLY A:13 , LYS A:77 , TYR A:111 , PRO A:113 , LYS A:114 , HOH A:268	BINDING SITE FOR RESIDUE SO4 A 225
07	AC7	SOFTWARE	ARG A:132 , ARG A:136 , GLU A:178	BINDING SITE FOR RESIDUE SO4 A 226
08	AC8	SOFTWARE	ARG A:46 , SER A:72 , ASP A:73 , HIS A:74 , HOH A:280 , HOH A:299 , HOH A:301	BINDING SITE FOR RESIDUE SO4 A 227
09	AC9	SOFTWARE	TYR A:9 , ILE A:20 , THR A:21 , HOH A:345 , HOH A:472	BINDING SITE FOR RESIDUE SO4 A 228
10	BC1	SOFTWARE	ARG A:29 , THR A:30 , HOH A:475	BINDING SITE FOR RESIDUE SO4 A 229
11	BC2	SOFTWARE	HIS B:71 , ILE B:72 , PHE B:148 , TYR B:149 , GLY B:150 , GLY B:151 , HOH B:308	BINDING SITE FOR RESIDUE SO4 B 252

(no "SS Bond" information available for 3GFU)

Asymmetric Unit

No.	Residues
1	Thr C:52	-	Pro C:53
2	Leu D:139	-	Phe D:140
3	Thr A:52	-	Pro A:53
4	Asn A:156	-	Gly A:157
5	Leu B:139	-	Phe B:140

(no "SAP(SNP)/Variant" information available for 3GFU)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PILI_CHAPERONE	PS00635	Gram-negative pili assembly chaperone signature.	FAEE_ECOLX	109-126	2	A:75-92 C:75-92

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PILI_CHAPERONE	PS00635	Gram-negative pili assembly chaperone signature.	FAEE_ECOLX	109-126	1	- C:75-92

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PILI_CHAPERONE	PS00635	Gram-negative pili assembly chaperone signature.	FAEE_ECOLX	109-126	1	A:75-92 -

(no "Exon" information available for 3GFU)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:211
 aligned with FAEE_ECOLX | P25401 from UniProtKB/Swiss-Prot  Length:258

    Alignment length:211
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244 
           FAEE_ECOLX    35 SLAVDQTRYIFRGDKDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASDHLPKDKESVYWLNLQDIPPALEGSGIAVALRTKLKLFYRPKALLEGRKGAEEGISLQSRPDGRTMLVNTTPYIFAIGSLLDGNGKKIATDNGTTQKLLMFMPGDEVQVKGNVVKVDSLNDYGELQTWTINKKKPAAPE 245
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeeee.....eeeeeee......eeeeeeee..........eeee..eeee....eeeeeeee..........eeeeeeeeee..........eeeeeeeeeeeehhhhh....hhhhhheeee.....eeee........eeeee.....ee..hhhhhhhhh......eee......eeeee.....eeeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------PILI_CHAPERONE    ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gfu A   1 SLAVDQTRYIFRGDKDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASDHLPKDKESVYWLNLQDIPPALEGSGIAVALRTKLKLFYRPKALLEGRKGAEEGISLQSRPDGRTMLVNTTPYIFAIGSLLDGNGKKIATDNGTTQKLLMFMPGDEVQVKGNVVKVDSLNDYGELQTWTINKKKPAAPE 211
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain B from PDB  Type:PROTEIN  Length:220
 aligned with Q6T3W5_ECOLX | Q6T3W5 from UniProtKB/TrEMBL  Length:262

    Alignment length:241
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261 
         Q6T3W5_ECOLX    22 RQKWEWKVGTGLNGFGNVLNDLTNGGTKLTITVTGNKPILLGRTKEAFATPVTGGVDGIPHIAFTDYEGASVVLRKPDGETNKNGLAYFVLPMKNAGGTKVGSVKVNASYAGVLGRGGVTSADGELLSLFADGLSSIFYGGLPRGSELSAGSAAAARTKLFGSLSRDDILGQIQRVNANVTSLVDVAGSYRENMEYTDGNVVSAAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYY 262
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.......--hhhhh.....eeeee....eeeeeeee...ee...........eeeee.....ee.....-----...eeeeeeeee.....eeeeeeeeeeeeeeeeee.....eeeeeee..---...............hhhhhhhhhhhhh..hhhhhhhhhhhhh....eeee.-----------...eeeeeeeeee....eeeeee.............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gfu B  11 RQKWEWKVGTGLNGF--VLNDLTNGGTKLTITVTGNKPILLGRTKEAFATPVTGGVDGIPHIAFTDYEGASVVLRKP-----KNGLAYFVLPMKNAGGTKVGSVKVNASYAGVLGRGGVTSADGELLSLFA---SSIFYGGLPRGSELSAGSAAAARTKLFGSLSRDDILGQIQRVNANVTSLVDV-----------DGNVVSAAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYY 251
                                    20    |  |30        40        50        60        70        80      |  -  |    100       110       120       130       140|   |  150       160       170       180       190     |   -       210       220       230       240       250 
                                         25 28                                                         87    93                                             141 145                                                196         208

Chain C from PDB  Type:PROTEIN  Length:210
 aligned with FAEE_ECOLX | P25401 from UniProtKB/Swiss-Prot  Length:258

    Alignment length:212
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244  
           FAEE_ECOLX    35 SLAVDQTRYIFRGDKDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASDHLPKDKESVYWLNLQDIPPALEGSGIAVALRTKLKLFYRPKALLEGRKGAEEGISLQSRPDGRTMLVNTTPYIFAIGSLLDGNGKKIATDNGTTQKLLMFMPGDEVQVKGNVVKVDSLNDYGELQTWTINKKKPAAPEA 246
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeeee.....eeeeeee......eeeeeeeee.........eeee..eeee....eeeeeeee..........eeeeeeeeee..........eeeeeeeeeeeehhhhh....hhhhhheeee.--..eeee........eeeeee....ee..hhhhhhhhh......eee....eeeeeee.....eeeee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------PILI_CHAPERONE    ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gfu C   1 SLAVDQTRYIFRGDKDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASDHLPKDKESVYWLNLQDIPPALEGSGIAVALRTKLKLFYRPKALLEGRKGAEEGISLQSR--GRTMLVNTTPYIFAIGSLLDGNGKKIATDNGTTQKLLMFMPGDEVQVKGNVVKVDSLNDYGELQTWTINKKKPAAPEA 212
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 |  |  140       150       160       170       180       190       200       210  
                                                                                                                                                             132  |                                                                             
                                                                                                                                                                135

Chain D from PDB  Type:PROTEIN  Length:219
 aligned with Q6T3W5_ECOLX | Q6T3W5 from UniProtKB/TrEMBL  Length:262

    Alignment length:242
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260  
         Q6T3W5_ECOLX    21 YRQKWEWKVGTGLNGFGNVLNDLTNGGTKLTITVTGNKPILLGRTKEAFATPVTGGVDGIPHIAFTDYEGASVVLRKPDGETNKNGLAYFVLPMKNAGGTKVGSVKVNASYAGVLGRGGVTSADGELLSLFADGLSSIFYGGLPRGSELSAGSAAAARTKLFGSLSRDDILGQIQRVNANVTSLVDVAGSYRENMEYTDGNVVSAAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYY 262
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.......--..-.......eeeee....eeeeeeee...ee...........eeeee.....ee.....----....eeeeeeeee.....eeeeeeeeeeeeeeeeee.....eeeeeee..---...............hhhhhhhhhhhh...hhhhhhhhhhhhh....eeee.-------------.eeeeeeeeee....eeeeee.............eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gfu D  10 HRQKWEWKVGTGLNGF--VL-DLTNGGTKLTITVTGNKPILLGRTKEAFATPVTGGVDGIPHIAFTDYEGASVVLRKP----NKNGLAYFVLPMKNAGGTKVGSVKVNASYAGVLGRGGVTSADGELLSLFA---SSIFYGGLPRGSELSAGSAAAARTKLFGSLSRDDILGQIQRVNANVTSLVDV-------------NVVSAAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYY 251
                                    19     |  29 |      39        49        59        69        79       | -  |     99       109       119       129       139 |   | 149       159       169       179       189      |  -         -|      219       229       239       249  
                                          25 28| |                                                      87   92                                              141 145                                                196           210                                         
                                              29 |                                                                                                                                                                                                                            
                                                31

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3GFU)

(no "CATH Domain" information available for 3GFU)

(no "Pfam Domain" information available for 3GFU)

Asymmetric Unit(hide GO term definitions)

Chain A,C (FAEE_ECOLX | P25401)

biological process
	GO:0071555	cell wall organization	A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
	GO:0061077	chaperone-mediated protein folding	The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone.
	GO:0043711	pilus organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a pilus, a short filamentous structure on a bacterial cell, flagella-like in structure and generally present in many copies.
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain B,D (Q6T3W5_ECOLX | Q6T3W5)

biological process
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
	GO:0009289	pilus	A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

Asymmetric Unit
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	Cis Peptide Bonds
		Asn A:156 - Gly A:157	[ RasMol ]
		Leu B:139 - Phe B:140	[ RasMol ]
		Leu D:139 - Phe D:140	[ RasMol ]
		Thr A:52 - Pro A:53	[ RasMol ]
		Thr C:52 - Pro C:53	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	3gfu
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UniProtKB/Swiss-Prot
	FAEE_ECOLX \| P25401	:	3f65 3f6i 3f6l 3gew
UniProtKB/TrEMBL
	Q6T3W5_ECOLX \| Q6T3W5	:	2j6g

2j6g	STRUCTURE OF A PLANT EXPRESSED FAEG
2j6r	STRUCTURE OF A PLANT EXPRESSED FAEG
3f65	STRUCTURE OF THE F4 FIMBRIAL CHAPERONE FAEE
3f6i	STRUCTURE OF THE F4 FIMBRIAL CHAPERONE FAEE
3f6l	STRUCTURE OF THE F4 FIMBRIAL CHAPERONE FAEE
3gea	DONOR STRAND COMPLEMENTED FAEG OF F4AD FIMBRIAE
3gew	FAEE-FAEG CHAPERONE-MAJOR PILIN COMPLEX OF F4 AD FIMBRIAE
3ggh	DONOR STRAND COMPLEMENTED FAEG OF F4AD FIMBRIAE
3hlr	DONOR STRAND COMPLEMENTED FAEG OF F4AD FIMBRIAE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 11)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (5, 5)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

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Gene Ontology (7, 7)

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