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(-) Description

Title :  DONOR STRAND COMPLEMENTED FAEG MONOMER OF F4 VARIANT AD
 
Authors :  I. Van Molle, K. Moonens, A. Garcia-Pino, L. Buts, J. Bouckaert, H. De
Date :  25 Feb 09  (Deposition) - 20 Oct 09  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Immunoglobulin Like Fold, Fimbrium, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Van Molle, K. Moonens, A. Garcia-Pino, L. Buts, M. De Kerpel, L. Wyns, J. Bouckaert, H. De Greve
Structural And Thermodynamic Characterization Of Pre- And Postpolymerization States In The F4 Fimbrial Subunit Faeg
J. Mol. Biol. V. 394 957 2009
PubMed-ID: 19799915  |  Reference-DOI: 10.1016/J.JMB.2009.09.059

(-) Compounds

Molecule 1 - K88 FIMBRIAL PROTEIN AD
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEXP96
    Expression System Strain: C43(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FAEG
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Strain: C1360-79
    Synonym: FAEGNTD/DSC, K88 PILIN, K88 ANTIGEN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2SO43Ligand/IonSULFATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO43Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO4-1Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:21 , LYS A:47 , PRO A:48 , HOH A:863 , HOH A:874BINDING SITE FOR RESIDUE SO4 A 275
2AC2SOFTWAREARG A:125 , GLY A:127 , VAL A:128 , THR A:129 , SER A:130 , HOH A:856 , HOH A:858BINDING SITE FOR RESIDUE SO4 A 276
3AC3SOFTWARESER A:164 , LYS A:178 , ASN A:197 , HOH A:497 , HOH B:854 , HOH B:884BINDING SITE FOR RESIDUE SO4 A 277
4AC4SOFTWAREPHE A:139 , ASN A:157 , GLU A:159 , HOH A:315 , HOH A:464 , HOH A:865 , GLU B:78 , LYS B:109BINDING SITE FOR RESIDUE GOL A 278
5AC5SOFTWARETHR A:40 , HOH A:833 , HOH A:871 , THR B:44 , GLY B:45 , GOL B:275BINDING SITE FOR RESIDUE GOL A 279
6AC6SOFTWARETHR A:33 , ASN A:34 , GLY A:35BINDING SITE FOR RESIDUE GOL A 280
7AC7SOFTWAREGOL A:279 , GLY B:45 , ASN B:46 , LEU B:172 , HOH B:829BINDING SITE FOR RESIDUE GOL B 275
8AC8SOFTWAREASN B:34 , GLY B:35 , HOH B:410BINDING SITE FOR RESIDUE GOL B 276

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GEA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Thr A:60 -Pro A:61

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GEA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GEA)

(-) Exons   (0, 0)

(no "Exon" information available for 3GEA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:274
 aligned with FAEG3_ECOLX | P14191 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:285
                                                                                                                                                                                                                                                                                                 285                     
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   |     -         -     
          FAEG3_ECOLX    22 WMTGDFNGSVDIGGSITADDYRQKWEWKVGTGLNGFGNVLNDLTNGGTKLTITVTGNKPILLGRTKEAFATPVTSGVDGIPHIAFTDYEGASVELRNPDGETEKGLAYFVLPMKNAEGTKVGSVKVNASYAGALGRGGVTSADGELMSLFAEGSHAIFYGGLPTNVKNSELKGGSAAAARTELFGSLSKNDILGQIQRVNANITSLVNVPGSFNENMAYTDGSVVSVAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYY---------------------   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......-----------......eeeee......eeee.hhh.....eeeee....eeeeeeee...ee..........eeeeee...................eeeeeeeee.....eeeeeeeeeeeeeeeeee.....eeeeeeee......................hhhhhhhhhhhhh..hhhhhhhhhhhhh....eeee....ee.........eeeeeeeeee....eeeeee.......eeeeeeeeeeeee.........eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gea A   1 WMTGHHH-----------HHHRQKWEWKVGTGLNGFGSVLNDLTNGGTKLTITVTGNKPILLGRTKEAFATPVTSGVDGIPHIAFTDYEGASVELRNPDGETEKGLAYFVLPMKNAEGTKVGSVKVNASYAGALGRGGVTSADGELMSLFAEGSHAIFYGGLPTNVKNSELKGGSAAAARTELFGSLSKNDILGQIQRVNANITSLVNVPGSFNENMAYTDGSVVSVAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYYDNKQMTGDFNGSVDIGGSITA 274
                                  |  -        |9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269     
                                  7           8                                                                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:261
 aligned with FAEG3_ECOLX | P14191 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:282
                                                                                                                                                                                                                                                                                                 285                  
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   |     -         -  
          FAEG3_ECOLX    22 WMTGDFNGSVDIGGSITADDYRQKWEWKVGTGLNGFGNVLNDLTNGGTKLTITVTGNKPILLGRTKEAFATPVTSGVDGIPHIAFTDYEGASVELRNPDGETEKGLAYFVLPMKNAEGTKVGSVKVNASYAGALGRGGVTSADGELMSLFAEGSHAIFYGGLPTNVKNSELKGGSAAAARTELFGSLSKNDILGQIQRVNANITSLVNVPGSFNENMAYTDGSVVSVAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYY------------------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........---------------.eeeee......eeee.hhh.....eeeeee...eeeeeeee....------....eeeeeee.....ee............eeeeeeeee.....eeeeeeeeeeeeeeeeee.....eeeeeee.......................hhhhhhhhhhhhh..hhhhhhhhhhhhh....eeeeeeeee..........eeeeeeeeee....eeeeee.......eeee..eeeeeeee....eeeeeee..eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3gea B   1 WMTGHHHH---------------KWEWKVGTGLNGFGSVLNDLTNGGTKLTITVTGNKPILLGRTKEAF------GVDGIPHIAFTDYEGASVELRNPDGETEKGLAYFVLPMKNAEGTKVGSVKVNASYAGALGRGGVTSADGELMSLFAEGSHAIFYGGLPTNVKNSELKGGSAAAARTELFGSLSKNDILGQIQRVNANITSLVNVPGSFNENMAYTDGSVVSVAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYYDQMTGDFNGSVDIGGSIT 273
                                   | -         -   |    19        29        39        49        |-     |  69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249    || 261       271  
                                   8              13                                           58     65                                                                                                                                                                                          254|                
                                                                                                                                                                                                                                                                                                   257
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GEA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3GEA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GEA)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (FAEG3_ECOLX | P14191)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
    GO:0009289    pilus    A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FAEG3_ECOLX | P14191: 3gew 3ggh 3hlr 4wei 4weu

(-) Related Entries Specified in the PDB File

2j6g PLANT EXPRESSED FAEG OF F4 AC 5/95 FIMBRIAE
2j6r PLANT EXPRESSED FAEG OF F4 AC GIS26 FIMBRIAE
3f65 STRUCTURE OF THE F4 FIMBRIAL CHAPERONE FAEE
3gew FAEE-FAEG CHAPERONE-MAJOR PILIN COMPLEX FOR F4 AD FIMBRIAE
3gfu FAEE-FAEG CHAPERONE-MAJOR PILIN COMPLEX FOR F4 AC 5/95 FIMBRIAE
3ggh DONOR STRAND COMPLEMENTED FAEG OF F4AD FIMBRIAE
3hlr DONOR STRAND COMPLEMENTED FAEG OF F4AD FIMBRIAE