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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ESCU C-TERMINAL DOMAIN WITH P263A MUTATION, SPACE GROUP P 1 21 1
 
Authors :  R. Zarivach, W. Deng, M. Vuckovic, H. B. Felise, H. V. Nguyen, S. I. Mille B. B. Finlay, N. C. J. Strynadka
Date :  18 Jan 08  (Deposition) - 22 Apr 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Auto Cleavage Protein, Intein Succinimid, Asparagine Cyclization, Flagella, T3Ss, Membrane Protein, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zarivach, W. Deng, M. Vuckovic, H. B. Felise, H. V. Nguyen, S. I. Miller, B. B. Finlay, N. C. Strynadka
Structural Analysis Of The Essential Self-Cleaving Type Iii Secretion Proteins Escu And Spas.
Nature V. 453 124 2008
PubMed-ID: 18451864  |  Reference-DOI: 10.1038/NATURE06832

(-) Compounds

Molecule 1 - ESCU
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 215-345
    Gene: ESCU
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Strain: EPEC E2348/69
 
Molecule 2 - ESCU
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 215-262
    Gene: ESCU
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Strain: EPEC E2348/69
 
Molecule 3 - ESCU
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 263-345
    Gene: ESCU
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Strain: EPEC E2348/69

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  BC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1PRO1Mod. Amino AcidPROLINE
2SNN1Mod. Amino AcidL-3-AMINOSUCCINIMIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1PRO1Mod. Amino AcidPROLINE
2SNN-1Mod. Amino AcidL-3-AMINOSUCCINIMIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1PRO-1Mod. Amino AcidPROLINE
2SNN1Mod. Amino AcidL-3-AMINOSUCCINIMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:316 , LYS A:317 , HIS A:320 , HOH A:362 , GLU C:299BINDING SITE FOR RESIDUE PRO A 4

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3C03)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3C03)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3C03)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3C03)

(-) Exons   (0, 0)

(no "Exon" information available for 3C03)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:98
 aligned with Q9AJ26_ECOLX | Q9AJ26 from UniProtKB/TrEMBL  Length:345

    Alignment length:99
                                   256       266       276       286       296       306       316       326       336         
         Q9AJ26_ECOLX   247 GSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY 345
               SCOP domains d3c03a_ A: Type III secretion proteins EscU                                                         SCOP domains
               CATH domains 3c03A00 A:247-343 secretion proteins EscU                                                        -- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeee...eeeeee.........eeeeeeehhhhhhhhhhhhhh...eeehhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh-. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 3c03 A 247 GSLANNIKKSTVIVKNATHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIRIAIDL-P   4
                                   256       266       276       286       296       306       316       326       336      | |
                                                                                                                          343 4


Chain B from PDB  Type:PROTEIN  Length:18
 aligned with Q9AJ26_ECOLX | Q9AJ26 from UniProtKB/TrEMBL  Length:345

    Alignment length:18
                                   254        
         Q9AJ26_ECOLX   245 QSGSLANNIKKSTVIVKN 262
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
                 Transcript ------------------ Transcript
                 3c03 B 245 QSGSLANNIKKSTVIVKd 262
                                   254       |
                                           262-SNN


Chain C from PDB  Type:PROTEIN  Length:80
 aligned with Q9AJ26_ECOLX | Q9AJ26 from UniProtKB/TrEMBL  Length:345

    Alignment length:80
                                   273       283       293       303       313       323       333       343
         Q9AJ26_ECOLX   264 THIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIRIAIDL 343
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains 3c03C00 C:264-343 secretion proteins EscU                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.........eeeeeeehhhhhhhhhhhhhh...eeehhhhhhhhhhhh......hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                 3c03 C 264 THIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIRIAIDL 343
                                   273       283       293       303       313       323       333       343
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3C03)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q9AJ26_ECOLX | Q9AJ26)
molecular function
    GO:0051213    dioxygenase activity    Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0009306    protein secretion    The controlled release of proteins from a cell.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  3c03
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9AJ26_ECOLX | Q9AJ26: 3bzl 3bzo 3bzp 3bzr 3bzs 3bzt 3bzv 3bzx 3bzy 3bzz 3c00

(-) Related Entries Specified in the PDB File

3bzl CRYSTAL STRUCTURAL OF NATIVE ESCU C-TERMINAL DOMAIN WITH SPACE GROUP C 1 2 1
3bzo CRYSTAL STRUCTURAL OF NATIVE ESCU C-TERMINAL DOMAIN WITH SPACE GROUP I 2 2 2
3bzp CRYSTAL STRUCTURE OF THE MUTATED N262A ESCU C-TERMINAL DOMAIN
3bzr CRYSTAL STRUCTURE OF THE MUTATED N262D ESCU C-TERMINAL DOMAIN
3bzs CRYSTAL STRUCTURE OF THE MUTATED N262D ESCU C-TERMINAL DOMAIN
3bzt CRYSTAL STRUCTURE OF THE MUTATED P263A ESCU C-TERMINAL DOMAIN WITH SPACE GROUP I 2 2 2
3bzv CRYSTAL STRUCTURE OF THE MUTATED T264A ESCU C-TERMINAL DOMAIN
3bzx CRYSTAL STRUCTURE OF THE MUTATED H265A ESCU C-TERMINAL DOMAIN
3bzy CRYSTAL STRUCTURE OF THE MUTATED Y316D ESCU C-TERMINAL DOMAIN
3bzz CRYSTAL STRUCTURE OF THE MUTATED R313T ESCU C-TERMINAL DOMAIN
3c00 CRYSTAL STRUCTURE OF THE MUTATED G247T ESCU C-TERMINAL DOMAIN
3c01 CRYSTAL STRUCTURE OF NATIVE SPAS C-TERMINAL DOMAIN