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(-) Description

Title :  CRYSTAL STRUCTURAL OF THE MUTATED N262A ESCU C-TERMINAL DOMAIN
 
Authors :  R. Zarivach, W. Deng, M. Vuckovic, H. B. Felise, H. V. Nguyen, S. I. Mille B. B. Finlay, N. C. J. Strynadka
Date :  18 Jan 08  (Deposition) - 22 Apr 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (4x)
Biol. Unit 3:  A  (2x)
Keywords :  Intein, T3Ss, Membrane, Asparagine Cyclization, Membrane Protein, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zarivach, W. Deng, M. Vuckovic, H. B. Felise, H. V. Nguyen, S. I. Miller, B. B. Finlay, N. C. Strynadka
Structural Analysis Of The Essential Self-Cleaving Type Iii Secretion Proteins Escu And Spas.
Nature V. 453 124 2008
PubMed-ID: 18451864  |  Reference-DOI: 10.1038/NATURE06832

(-) Compounds

Molecule 1 - ESCU
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN
    Gene: ESCU
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Strain: EPEC E2348/69

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (4x): A
Biological Unit 3 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3BZP)

(-) Sites  (0, 0)

(no "Site" information available for 3BZP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BZP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BZP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BZP)

(-) Exons   (0, 0)

(no "Exon" information available for 3BZP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:100
 aligned with Q9AJ26_ECOLX | Q9AJ26 from UniProtKB/TrEMBL  Length:345

    Alignment length:100
                                   255       265       275       285       295       305       315       325       335       345
         Q9AJ26_ECOLX   246 SGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY 345
               SCOP domains d3bzpa1 A:246-345 Type III secretion proteins EscU                                                   SCOP domains
               CATH domains 3bzpA00 A:246-345 secretion proteins EscU                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.eeeee...eeeeee.........eeeeeeehhhhhhhhhhhhhhh..eeehhhhhhhhhhhh......hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 3bzp A 246 SGSLANNIKKSTVIVKAPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY 345
                                   255       265       275       285       295       305       315       325       335       345
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BZP)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q9AJ26_ECOLX | Q9AJ26)
molecular function
    GO:0051213    dioxygenase activity    Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0009306    protein secretion    The controlled release of proteins from a cell.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9AJ26_ECOLX | Q9AJ26: 3bzl 3bzo 3bzr 3bzs 3bzt 3bzv 3bzx 3bzy 3bzz 3c00 3c03

(-) Related Entries Specified in the PDB File

3bzl CRYSTAL STRUCTURAL OF NATIVE ESCU C-TERMINAL DOMAIN,SPACE GROUP C 1 2 1
3bzo CRYSTAL STRUCTURAL OF NATIVE ESCU C-TERMINAL DOMAIN, SPACE GROUP I 2 2 2
3bzr CRYSTAL STRUCTURE OF ESCU C-TERMINAL DOMAIN WITH N262D MUTATION, SPACE GROUP P 41 21 2
3bzs CRYSTAL STRUCTURE OF ESCU C-TERMINAL DOMAIN WITH N262D MUTATION, SPACE GROUP P 21 21 21
3bzt CRYSTAL STRUCTURAL OF THE MUTATED P263A ESCU C-TERMINAL DOMAIN
3bzv CRYSTAL STRUCTURAL OF THE MUTATED T264A ESCU C-TERMINAL DOMAIN
3bzx CRYSTAL STRUCTURAL OF THE MUTATED H265A ESCU C-TERMINAL DOMAIN
3bzy CRYSTAL STRUCTURAL OF THE MUTATED Y316D ESCU C-TERMINAL DOMAIN
3bzz CRYSTAL STRUCTURAL OF THE MUTATED R313T ESCU C-TERMINAL DOMAIN
3c00 CRYSTAL STRUCTURAL OF THE MUTATED G247T ESCU C-TERMINAL DOMAIN
3c01 CRYSTAL STRUCTURAL OF NATIVE SPAS C-TERMINAL DOMAIN
3c03 CRYSTAL STRUCTURAL OF THE MUTATED P263A ESCU C-TERMINAL DOMAIN