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(-) Description

Title :  CRYSTAL STRUCTURE OF RUCO/APO-WTFR
 
Authors :  K. Fujita, Y. Tanaka, S. Abe, T. Hikage, T. Kuchimaru, S. Kizaka-Kondoh
Date :  09 Jun 14  (Deposition) - 15 Jul 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (24x)
Keywords :  Iron Storage, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Fujita, Y. Tanaka, T. Sho, S. Ozeki, S. Abe, T. Hikage, T. Kuchimaru, S. Kizaka-Kondoh, T. Ueno
Intracellular Co Release From Composite Of Ferritin And Ruthenium Carbonyl Complexes.
J. Am. Chem. Soc. V. 136 16902 2014
PubMed-ID: 25352251  |  Reference-DOI: 10.1021/JA508938F

(-) Compounds

Molecule 1 - FERRITIN LIGHT CHAIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMK2
    Expression System Strain: NOVA BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FTL
    Organism Common: DOMESTIC HORSE,EQUINE
    Organism Scientific: EQUUS CABALLUS
    Organism Taxid: 9796
    Synonym: FERRITIN L SUBUNIT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (24x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 15)

Asymmetric Unit (5, 15)
No.NameCountTypeFull Name
1CD3Ligand/IonCADMIUM ION
2EDO8Ligand/Ion1,2-ETHANEDIOL
4RU2Ligand/IonRUTHENIUM ION
3RU11Ligand/IonBIS(OXIDANIUMYLIDYNEMETHYL)RUTHENIUM(2+)
5SO41Ligand/IonSULFATE ION
Biological Unit 1 (3, 240)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2EDO192Ligand/Ion1,2-ETHANEDIOL
4RU-1Ligand/IonRUTHENIUM ION
3RU124Ligand/IonBIS(OXIDANIUMYLIDYNEMETHYL)RUTHENIUM(2+)
5SO424Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:130BINDING SITE FOR RESIDUE CD A 201
02AC2SOFTWAREASP A:127BINDING SITE FOR RESIDUE CD A 202
03AC3SOFTWAREASP A:80 , GLN A:82BINDING SITE FOR RESIDUE CD A 203
04AC4SOFTWAREGLN A:6 , ASN A:7 , HOH A:332 , HOH A:353 , HOH A:392 , HOH A:411BINDING SITE FOR RESIDUE SO4 A 204
05AC5SOFTWAREGLU A:60 , ARG A:64 , HIS A:132 , EDO A:208 , HOH A:364BINDING SITE FOR RESIDUE EDO A 205
06AC6SOFTWARETYR A:36 , GLY A:90 , THR A:91 , ARG A:153 , GLU A:163 , HOH A:416BINDING SITE FOR RESIDUE EDO A 206
07AC7SOFTWAREPHE A:50 , GLU A:53 , GLU A:57 , LEU A:140 , LYS A:143BINDING SITE FOR RESIDUE EDO A 207
08AC8SOFTWARETYR A:23 , GLU A:57 , LYS A:58 , GLU A:137 , EDO A:205 , HOH A:320BINDING SITE FOR RESIDUE EDO A 208
09AC9SOFTWARETHR A:91 , THR A:92 , LEU A:93 , GLU A:163 , HOH A:398BINDING SITE FOR RESIDUE EDO A 209
10BC1SOFTWAREHIS A:114 , SER A:118 , ALA A:121 , RU A:213 , HOH A:319BINDING SITE FOR RESIDUE EDO A 210
11BC2SOFTWAREASP A:112 , LEU A:113 , HOH A:339 , HOH A:355BINDING SITE FOR RESIDUE EDO A 211
12BC3SOFTWARELYS A:104 , SER A:105 , HOH A:338BINDING SITE FOR RESIDUE EDO A 212
13BC4SOFTWAREHIS A:114 , CYS A:126 , GLU A:130 , EDO A:210BINDING SITE FOR RESIDUE RU A 213
14BC5SOFTWAREHIS A:132BINDING SITE FOR RESIDUE RU A 214
15BC6SOFTWAREASP A:38 , GLU A:45 , CYS A:48 , HOH A:367BINDING SITE FOR RESIDUE RU1 A 215

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WVW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3WVW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WVW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WVW)

(-) Exons   (0, 0)

(no "Exon" information available for 3WVW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wvw A   1 SSQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKMQNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFERLTLKH 173
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WVW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WVW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WVW)

(-) Gene Ontology  (6, 6)

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  FRIL_HORSE | P02791
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FRIL_HORSE | P02791: 1aew 1dat 1gwg 1hrs 1ier 1ies 1xz1 1xz3 2g4h 2gyd 2v2i 2v2j 2v2l 2v2m 2v2n 2v2o 2v2p 2v2r 2v2s 2w0o 2z5p 2z5q 2z5r 2za6 2za7 2za8 2zg7 2zg8 2zg9 2zur 3af7 3af8 3af9 3f32 3f33 3f34 3f35 3f36 3f37 3f38 3f39 3fi6 3h7g 3noz 3np0 3np2 3o7r 3o7s 3rav 3rd0 3u90 3wvu 3wvv 4de6 4v1w 4z3b 5axs 5czu 5e1u 5e2d 5erj 5erk 5gu0 5gu1 5gu2 5gu3 5hqo 5ix6 5lg2 5mij 5mik

(-) Related Entries Specified in the PDB File

3wvu 3wvv