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(-) Description

Title :  CRYSTAL STRUCTURE OF AU.CL-APO-E45C/R52C-RHLFR
 
Authors :  B. Maity, S. Abe, T. Ueno
Date :  24 Aug 16  (Deposition) - 29 Mar 17  (Release) - 29 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  X
Biol. Unit 1:  X  (24x)
Keywords :  Iron Storage, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Maity, S. Abe, T. Ueno
Observation Of Gold Sub-Nanocluster Nucleation Within A Crystalline Protein Cage
Nat Commun V. 8 14820 2017
PubMed-ID: 28300064  |  Reference-DOI: 10.1038/NCOMMS14820

(-) Compounds

Molecule 1 - FERRITIN LIGHT CHAIN
    Chains: X
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FTL
    Mutation: YES
    Organism Common: HORSE
    Organism Scientific: EQUUS CABALLUS
    Organism Taxid: 9796
    Synonym: FERRITIN L SUBUNIT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : X
Biological Unit 1 (24x): X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric Unit (4, 15)
No.NameCountTypeFull Name
1AU8Ligand/IonGOLD ION
2CD3Ligand/IonCADMIUM ION
3EDO2Ligand/Ion1,2-ETHANEDIOL
4SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 96)
No.NameCountTypeFull Name
1AU-1Ligand/IonGOLD ION
2CD-1Ligand/IonCADMIUM ION
3EDO48Ligand/Ion1,2-ETHANEDIOL
4SO448Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY X:34 , CYS X:48 , CYS X:52 , AU X:202 , AU X:203binding site for residue AU X 201
02AC2SOFTWARECYS X:45 , CYS X:48 , HIS X:49 , AU X:201binding site for residue AU X 202
03AC3SOFTWARECYS X:52 , AU X:201 , HOH X:375binding site for residue AU X 203
04AC4SOFTWAREHIS X:114 , CYS X:126 , AU X:205binding site for residue AU X 204
05AC5SOFTWARESER X:118 , ASP X:122 , CYS X:126 , AU X:204 , HOH X:364binding site for residue AU X 205
06AC6SOFTWAREPHE X:50 , MET X:96 , HIS X:147 , AU X:207binding site for residue AU X 206
07AC7SOFTWAREPHE X:50 , MET X:96 , MET X:144 , HIS X:147 , AU X:206binding site for residue AU X 207
08AC8SOFTWAREHIS X:147binding site for residue AU X 208
09AC9SOFTWAREASP X:80 , GLN X:82binding site for residue CD X 209
10AD1SOFTWAREGLU X:130binding site for residue CD X 210
11AD2SOFTWAREGLU X:56 , GLU X:60binding site for residue CD X 211
12AD3SOFTWAREGLN X:6 , ASN X:7 , HOH X:319binding site for residue SO4 X 212
13AD4SOFTWARELEU X:24 , SER X:27 , TYR X:28 , ARG X:59binding site for residue SO4 X 213
14AD5SOFTWARETYR X:36 , GLY X:90 , THR X:91 , ARG X:153 , GLU X:163binding site for residue EDO X 214
15AD6SOFTWARESER X:105 , GLN X:108 , HOH X:322binding site for residue EDO X 215

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GU0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5GU0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GU0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GU0)

(-) Exons   (0, 0)

(no "Exon" information available for 5GU0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gu0 X   3 QIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALCGVCHFFCELAEEKREGAERLLKMQNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFERLTLK 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GU0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GU0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GU0)

(-) Gene Ontology  (6, 6)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FRIL_HORSE | P02791: 1aew 1dat 1gwg 1hrs 1ier 1ies 1xz1 1xz3 2g4h 2gyd 2v2i 2v2j 2v2l 2v2m 2v2n 2v2o 2v2p 2v2r 2v2s 2w0o 2z5p 2z5q 2z5r 2za6 2za7 2za8 2zg7 2zg8 2zg9 2zur 3af7 3af8 3af9 3f32 3f33 3f34 3f35 3f36 3f37 3f38 3f39 3fi6 3h7g 3noz 3np0 3np2 3o7r 3o7s 3rav 3rd0 3u90 3wvu 3wvv 3wvw 4de6 4v1w 4z3b 5axs 5czu 5e1u 5e2d 5erj 5erk 5gu1 5gu2 5gu3 5hqo 5ix6 5lg2 5mij 5mik

(-) Related Entries Specified in the PDB File

5gu1 5gu2 5gu3