3H7G - JenaLib

Title :   APO-FR WITH AU IONS

Authors :   M. Abe, T. Ueno, S. Abe, M. Suzuki, T. Goto, Y. Toda, T. Akita, Y. Yamada, Y

Date :   27 Apr 09 (Deposition) - 15 Sep 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.65

Chains :   Asym. Unit : A
Biol. Unit 1: A  (24x)

Keywords :   Iron Storage, Light Chain Apoferritin, Metal Binding Protein, Iron (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Suzuki, M. Abe, T. Ueno, S. Abe, T. Goto, Y. Toda, T. Akita, Y. Yamada, Y. Watanabe
Preparation And Catalytic Reaction Of Au/Pd Bimetallic Nanoparticles In Apo-Ferritin
Chem. Commun. (Camb. ) V. 32 4871 2009
PubMed-ID: 19652809 | Reference-DOI: 10.1039/B908742G

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 16)

Sites (15, 15)

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:45 , CYS A:48 , HIS A:49 , AU3 A:202 , AU3 A:206	BINDING SITE FOR RESIDUE AU3 A 201
02	AC2	SOFTWARE	GLY A:34 , CYS A:48 , AU3 A:201 , HOH A:1129	BINDING SITE FOR RESIDUE AU3 A 202
03	AC3	SOFTWARE	HIS A:114 , CYS A:126 , AU3 A:204 , HOH A:1114	BINDING SITE FOR RESIDUE AU3 A 203
04	AC4	SOFTWARE	SER A:118 , ASP A:122 , CYS A:126 , AU3 A:203 , HOH A:1061	BINDING SITE FOR RESIDUE AU3 A 204
05	AC5	SOFTWARE	PHE A:50 , MET A:96 , HIS A:147	BINDING SITE FOR RESIDUE AU3 A 205
06	AC6	SOFTWARE	ASP A:38 , CYS A:48 , AU3 A:201 , GOL A:402 , HOH A:1172	BINDING SITE FOR RESIDUE AU3 A 206
07	AC7	SOFTWARE	ASP A:80 , GLN A:82	BINDING SITE FOR RESIDUE CD A 207
08	AC8	SOFTWARE	GLU A:130	BINDING SITE FOR RESIDUE CD A 208
09	AC9	SOFTWARE	GLU A:45 , LYS A:143 , ASP A:146 , HOH A:1040 , HOH A:1049 , HOH A:1065 , HOH A:1169	BINDING SITE FOR RESIDUE SO4 A 301
10	BC1	SOFTWARE	GLN A:6 , ASN A:7 , HOH A:1034 , HOH A:1046 , HOH A:1086	BINDING SITE FOR RESIDUE SO4 A 302
11	BC2	SOFTWARE	ARG A:25 , SER A:85 , HOH A:1107	BINDING SITE FOR RESIDUE SO4 A 303
12	BC3	SOFTWARE	ASN A:7 , GLN A:108 , HIS A:114 , ALA A:121 , HOH A:1046 , HOH A:1131 , HOH A:1138	BINDING SITE FOR RESIDUE GOL A 401
13	BC4	SOFTWARE	ASP A:38 , ARG A:52 , LYS A:67 , AU3 A:206 , HOH A:1157	BINDING SITE FOR RESIDUE GOL A 402
14	BC5	SOFTWARE	TYR A:23 , GLU A:57 , LYS A:58 , HIS A:132 , GLU A:136 , GLU A:137	BINDING SITE FOR RESIDUE GOL A 403
15	BC6	SOFTWARE	SER A:2 , GLN A:3 , LYS A:104 , HOH A:1108	BINDING SITE FOR RESIDUE GOL A 404

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 3)

Asymmetric Unit (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FERRITIN_LIKE	PS50905	Ferritin-like diiron domain profile.	FRIL_HORSE	7-156	1	A:6-155
2	FERRITIN_1	PS00540	Ferritin iron-binding regions signature 1.	FRIL_HORSE	58-76	1	A:57-75
3	FERRITIN_2	PS00204	Ferritin iron-binding regions signature 2.	FRIL_HORSE	123-143	1	A:122-142

Biological Unit 1 (3, 72)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FERRITIN_LIKE	PS50905	Ferritin-like diiron domain profile.	FRIL_HORSE	7-156	24	A:6-155
2	FERRITIN_1	PS00540	Ferritin iron-binding regions signature 1.	FRIL_HORSE	58-76	24	A:57-75
3	FERRITIN_2	PS00204	Ferritin iron-binding regions signature 2.	FRIL_HORSE	123-143	24	A:122-142

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:173
 aligned with FRIL_HORSE | P02791 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172   
           FRIL_HORSE     3 SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKMQNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFERLTLKHD 175
               SCOP domains d3h7ga_ A: (Apo)ferritin                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----FERRITIN_LIKE  PDB: A:6-155 UniProt: 7-156                                                                                                            ------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------FERRITIN_1         ----------------------------------------------FERRITIN_2           -------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h7g A   2 SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKMQNQRGGRALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFERLTLKHD 174
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

Asymmetric Unit(hide GO term definitions)

Chain A (FRIL_HORSE | P02791)

molecular function
	GO:0008199	ferric iron binding	Interacting selectively and non-covalently with ferric iron, Fe(III).
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0006879	cellular iron ion homeostasis	Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
	GO:0006826	iron ion transport	The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
cellular component
	GO:0008043	intracellular ferritin complex	A ferritin complex located in the cell. Intracellular ferritin complexes contain 24 subunits, in a mixture of L (light) chains and H (heavy) chains.

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