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(-) Description

Title :  CRYSTAL STRUCTURE OF MNCO/APO-R52CFR
 
Authors :  K. Fujita, Y. Tanaka, S. Abe, T. Ueno
Date :  31 Mar 15  (Deposition) - 21 Oct 15  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.42
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (24x)
Keywords :  Iron Storage (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Fujita, Y. Tanaka, S. Abe, T. Ueno
A Photoactive Carbon-Monoxide-Releasing Protein Cage For Dose-Regulated Delivery In Living Cells
Angew. Chem. Int. Ed. Engl. V. 55 1056 2016
PubMed-ID: 26332099  |  Reference-DOI: 10.1002/ANIE.201506738

(-) Compounds

Molecule 1 - FERRITIN LIGHT CHAIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMK2
    Expression System StrainNOVA BLUE
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 2-175
    GeneFTL
    Organism CommonHORSE
    Organism ScientificEQUUS CABALLUS
    Organism Taxid9796
    SynonymFERRITIN L SUBUNIT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (24x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric Unit (4, 7)
No.NameCountTypeFull Name
1CD3Ligand/IonCADMIUM ION
2GOL1Ligand/IonGLYCEROL
3MN2Ligand/IonMANGANESE (II) ION
4SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 48)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2GOL24Ligand/IonGLYCEROL
3MN-1Ligand/IonMANGANESE (II) ION
4SO424Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:80 , GLN A:82binding site for residue CD A 201
2AC2SOFTWAREASP A:127 , HOH A:314 , HOH A:327binding site for residue CD A 202
3AC3SOFTWAREGLU A:130 , HOH A:327binding site for residue CD A 203
4AC4SOFTWARETYR A:36 , ARG A:39 , ASP A:41 , ARG A:75 , GLU A:88 , HOH A:344binding site for residue GOL A 204
5AC5SOFTWARECYS A:48 , CYS A:52binding site for residue MN A 205
6AC6SOFTWAREASP A:38 , CYS A:48 , HIS A:49 , HOH A:328binding site for residue MN A 206
7AC7SOFTWAREGLN A:6 , ASN A:7 , HOH A:319 , HOH A:335 , HOH A:354 , HOH A:410 , HOH A:420binding site for residue SO4 A 207

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z3B)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Z3B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z3B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z3B)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z3B)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4z3b A   1 SSQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFCELAEEKREGAERLLKMQNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFERLTLKHD 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z3B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z3B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z3B)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FRIL_HORSE | P027911aew 1dat 1gwg 1hrs 1ier 1ies 1xz1 1xz3 2g4h 2gyd 2v2i 2v2j 2v2l 2v2m 2v2n 2v2o 2v2p 2v2r 2v2s 2w0o 2z5p 2z5q 2z5r 2za6 2za7 2za8 2zg7 2zg8 2zg9 2zur 3af7 3af8 3af9 3f32 3f33 3f34 3f35 3f36 3f37 3f38 3f39 3fi6 3h7g 3noz 3np0 3np2 3o7r 3o7s 3rav 3rd0 3u90 3wvu 3wvv 3wvw 4de6 4v1w 5axs 5czu 5e1u 5e2d 5erj 5erk 5gu0 5gu1 5gu2 5gu3 5hqo 5ix6 5lg2 5mij 5mik

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4Z3B)