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(-) Description

Title :  CRYSTAL STRUCTURE OF IRCP*-APO-FR
 
Authors :  B. Maity, K. Fukumori, S. Abe, T. Ueno
Date :  30 Sep 15  (Deposition) - 20 Apr 16  (Release) - 20 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.56
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (24x)
Keywords :  Iron Storage, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Maity, K. Fukumori, S. Abe, T. Ueno
Immobilization Of Two Organometallic Complexes Into A Singl Cage To Construct Protein-Based Microcompartments
Chem. Commun. (Camb. ) V. 52 5463 2016
PubMed-ID: 27021005  |  Reference-DOI: 10.1039/C6CC00679E

(-) Compounds

Molecule 1 - FERRITIN LIGHT CHAIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FTL
    Organism Common: HORSE
    Organism Scientific: EQUUS CABALLUS
    Organism Taxid: 9796
    Synonym: FERRITIN L SUBUNIT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (24x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric Unit (4, 10)
No.NameCountTypeFull Name
1CD1Ligand/IonCADMIUM ION
2IR36Ligand/IonIRIDIUM (III) ION
3RIR1Ligand/Ion[(1,2,3,4,5-ETA)-1,2,3,4,5-PENTAMETHYLCYCLOPENTADIENYL]IRIDIUM(III)
4SO42Ligand/IonSULFATE ION
Biological Unit 1 (3, 216)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2IR3144Ligand/IonIRIDIUM (III) ION
3RIR24Ligand/Ion[(1,2,3,4,5-ETA)-1,2,3,4,5-PENTAMETHYLCYCLOPENTADIENYL]IRIDIUM(III)
4SO448Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:114 , CYS A:126 , GLU A:130binding site for residue IR3 A 201
02AC2SOFTWAREHIS A:49 , IR3 A:204 , IR3 A:205binding site for residue IR3 A 202
03AC3SOFTWAREPHE A:128 , HIS A:132 , HOH A:308binding site for residue IR3 A 203
04AC4SOFTWAREHIS A:49 , HIS A:173 , IR3 A:202 , IR3 A:205binding site for residue IR3 A 204
05AC5SOFTWAREHIS A:49 , HIS A:173 , IR3 A:202 , IR3 A:204binding site for residue IR3 A 205
06AC6SOFTWARELYS A:172 , HOH A:378binding site for residue IR3 A 206
07AC7SOFTWAREASP A:80binding site for residue CD A 207
08AC8SOFTWAREGLN A:6 , ASN A:7 , HOH A:302 , HOH A:324 , HOH A:342binding site for residue SO4 A 208
09AC9SOFTWAREGLU A:45 , LYS A:143 , ASP A:146 , HIS A:147 , HOH A:328 , HOH A:339 , HOH A:355 , HOH A:377 , HOH A:407binding site for residue SO4 A 209
10AD1SOFTWAREPHE A:35 , ASP A:38 , GLU A:45 , CYS A:48 , HIS A:49 , ARG A:52binding site for residue RIR A 210

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5E1U)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5E1U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E1U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E1U)

(-) Exons   (0, 0)

(no "Exon" information available for 5E1U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e1u A   1 SSQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKMQNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFERLTLKH 173
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E1U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E1U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E1U)

(-) Gene Ontology  (6, 6)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FRIL_HORSE | P02791: 1aew 1dat 1gwg 1hrs 1ier 1ies 1xz1 1xz3 2g4h 2gyd 2v2i 2v2j 2v2l 2v2m 2v2n 2v2o 2v2p 2v2r 2v2s 2w0o 2z5p 2z5q 2z5r 2za6 2za7 2za8 2zg7 2zg8 2zg9 2zur 3af7 3af8 3af9 3f32 3f33 3f34 3f35 3f36 3f37 3f38 3f39 3fi6 3h7g 3noz 3np0 3np2 3o7r 3o7s 3rav 3rd0 3u90 3wvu 3wvv 3wvw 4de6 4v1w 4z3b 5axs 5czu 5e2d 5erj 5erk 5gu0 5gu1 5gu2 5gu3 5hqo 5ix6 5lg2 5mij 5mik

(-) Related Entries Specified in the PDB File

5e2d