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(-) Description

Title :  PGLD FROM CAMPYLOBACTER JEJUNI, NCTC 11168, IN COMPLEX WITH ACETYL COENZYME A
 
Authors :  N. B. Olivier, B. Imperiali
Date :  26 Dec 07  (Deposition) - 29 Jul 08  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Left-Hand Beta Helix, Hexapeptide Repeat, Udp, Acetyl Coenzyme A, Rossmann Fold, Bacillosamine, Campylobacter Jejuni, Pgl, N-Linked Glycosylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. B. Olivier, B. Imperiali
Crystal Structure And Catalytic Mechanism Of Pgld From Campylobacter Jejuni.
J. Biol. Chem. V. 283 27937 2008
PubMed-ID: 18667421  |  Reference-DOI: 10.1074/JBC.M801207200

(-) Compounds

Molecule 1 - ACETYLTRANSFERASE
    ChainsA, B, C
    EC Number2.7.7.23
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPETGQ
    Expression System StrainBL21(DE3)
    Expression System Vector TypePLASMID
    GenePGLD
    Organism ScientificCAMPYLOBACTER JEJUNI
    StrainNCTC 11168

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1ACO3Ligand/IonACETYL COENZYME *A

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:118 , HIS A:134 , SER A:136 , PHE A:152 , GLY A:154 , ILE A:155 , GLY A:172 , GLY A:173 , MET A:195 , HOH A:404 , HOH A:443 , HOH A:477 , HOH A:499 , HOH A:512 , HOH A:569 , ALA C:142 , LEU C:160 , PRO C:191 , HOH C:466BINDING SITE FOR RESIDUE ACO A 401
2AC2SOFTWAREALA B:142 , LEU B:160 , PRO B:191 , HOH B:562 , ASN C:118 , HIS C:134 , SER C:136 , PHE C:152 , GLY C:154 , ILE C:155 , GLY C:172 , GLY C:173 , HOH C:416 , HOH C:461 , HOH C:470 , HOH C:529 , HOH C:544 , HOH C:545BINDING SITE FOR RESIDUE ACO C 402
3AC3SOFTWAREALA A:142 , LEU A:160 , PRO A:191 , HOH A:409 , ASN B:118 , HIS B:134 , SER B:136 , PHE B:152 , GLY B:154 , ILE B:155 , GLY B:172 , GLY B:173 , MET B:195 , HOH B:416 , HOH B:445 , HOH B:491 , HOH B:513 , HOH B:535 , HOH B:577 , HOH B:586BINDING SITE FOR RESIDUE ACO B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BSY)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Val A:190 -Pro A:191
2Val B:190 -Pro B:191
3Val C:190 -Pro C:191

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BSY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BSY)

(-) Exons   (0, 0)

(no "Exon" information available for 3BSY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:193
 aligned with PGLD_CAMJE | Q0P9D1 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:193
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192   
           PGLD_CAMJE     3 RTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFESTLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM 195
               SCOP domains d3bsya_ A: Acetyltransferase PglD                                                                                                                                                                 SCOP domains
               CATH domains 3bsyA01 A:3-76  [code=3.40.50.20, no name defined]                        3bsyA02 A:77-188 Hexapeptide repeat proteins                                                                    ------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..hhhhhhhhhhhhhhh..eeeee...............eeee...hhhhhhhhhhhhhhh......ee....ee....ee......ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee........eee....ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bsy A   3 RTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFESTLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM 195
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192   

Chain B from PDB  Type:PROTEIN  Length:194
 aligned with PGLD_CAMJE | Q0P9D1 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:194
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    
           PGLD_CAMJE     2 ARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFESTLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM 195
               SCOP domains d3bsyb_ B: Acetyltransferase PglD                                                                                                                                                                  SCOP domains
               CATH domains 3bsyB01 B:2-76  [code=3.40.50.20, no name defined]                         3bsyB02 B:77-188 Hexapeptide repeat proteins                                                                    ------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhhhhhh...eeeee...............eeee...hhhhhhhhhhhhhhh......ee....ee....ee......ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee........eee....ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bsy B   2 ARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFESTLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM 195
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    

Chain C from PDB  Type:PROTEIN  Length:194
 aligned with PGLD_CAMJE | Q0P9D1 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:194
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    
           PGLD_CAMJE     2 ARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFESTLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM 195
               SCOP domains d3bsyc_ C: Acetyltransferase PglD                                                                                                                                                                  SCOP domains
               CATH domains 3bsyC01 C:2-76  [code=3.40.50.20, no name defined]                         3bsyC02 C:77-188 Hexapeptide repeat proteins                                                                    ------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhhhhhhh..eeeee...............eeee...hhhhhhhhhhhhhhh......ee....ee....ee......ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee........eee....ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bsy C   2 ARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFESTLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM 195
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BSY)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (PGLD_CAMJE | Q0P9D1)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
    GO:0016747    transferase activity, transferring acyl groups other than amino-acyl groups    Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
biological process
    GO:0018279    protein N-linked glycosylation via asparagine    The glycosylation of protein via the N4 atom of peptidyl-asparagine forming N4-glycosyl-L-asparagine; the most common form is N-acetylglucosaminyl asparagine; N-acetylgalactosaminyl asparagine and N4 glucosyl asparagine also occur. This modification typically occurs in extracellular peptides with an N-X-(ST) motif. Partial modification has been observed to occur with cysteine, rather than serine or threonine, in the third position; secondary structure features are important, and proline in the second or fourth positions inhibits modification.
    GO:0006486    protein glycosylation    A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PGLD_CAMJE | Q0P9D12npo 2vhe 3bfp 3bss 3bsw 5t2y 5tyh

(-) Related Entries Specified in the PDB File

2npo STRUCTURAL GENOMICS
3bss PGLD IN COMPLEX WITH NATIVE SUBSTRATE UDP-4-AMINO-SUGAR
3bsw PGLD IN COMPLEX WITH CITRATE