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(-) Description

Title :  PGLD FROM CAMPYLOBACTER JEJUNI, NCTC 11168, WITH NATIVE SUBSTRATE
 
Authors :  N. B. Olivier, B. Imperiali
Date :  26 Dec 07  (Deposition) - 22 Jul 08  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Left-Hand Beta Helix, Hexapeptide Repeat, Udp, Acetyl Coenzyme Z, Rossmann Fold, Bacillosamine, Campylobacter, Pgl, N-Linked Glycosylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. B. Olivier, B. Imperiali
Crystal Structure And Catalytic Mechanism Of Pgld From Campylobacter Jejuni.
J. Biol. Chem. V. 283 27937 2008
PubMed-ID: 18667421  |  Reference-DOI: 10.1074/JBC.M801207200

(-) Compounds

Molecule 1 - ACETYLTRANSFERASE
    Chains: A
    EC Number: 2.7.7.23
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETGQ
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PGLD
    Organism Scientific: CAMPYLOBACTER JEJUNI
    Organism Taxid: 197
    Strain: NCTC 11168

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1UD41Ligand/IonUDP-2-ACETAMIDO-4-AMINO-2,4,6-TRIDEOXY-ALPHA-D-GLUCOPYRANOSE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1UD43Ligand/IonUDP-2-ACETAMIDO-4-AMINO-2,4,6-TRIDEOXY-ALPHA-D-GLUCOPYRANOSE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:10 , SER A:13 , GLY A:14 , HIS A:15 , ASP A:35 , ASP A:36 , PHE A:37 , ILE A:55 , GLY A:56 , ILE A:60 , HIS A:125 , HIS A:134 , ASN A:162 , HOH A:203 , HOH A:206 , HOH A:211 , HOH A:216 , HOH A:219 , HOH A:223 , HOH A:262 , HOH A:263 , HOH A:339 , HOH A:348 , HOH A:357BINDING SITE FOR RESIDUE UD4 A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BSS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BSS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BSS)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3BSS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:194
 aligned with PGLD_CAMJE | Q0P9D1 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:194
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    
           PGLD_CAMJE     2 ARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFESTLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM 195
               SCOP domains d3bssa_ A: Acetyltransferase PglD                                                                                                                                                                  SCOP domains
               CATH domains 3bssA01 A:2-76  [code=3.40.50.20, no name defined]                         3bssA02 A:77-188 Hexapeptide repeat proteins                                                                    ------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhhhhhhh..eeeee...............eeee...hhhhhhhhhhhhhhh......ee....ee....ee......ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee........ee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bss A   2 ARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFESTLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM 195
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BSS)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (PGLD_CAMJE | Q0P9D1)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
    GO:0016747    transferase activity, transferring acyl groups other than amino-acyl groups    Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
biological process
    GO:0018279    protein N-linked glycosylation via asparagine    The glycosylation of protein via the N4 atom of peptidyl-asparagine forming N4-glycosyl-L-asparagine; the most common form is N-acetylglucosaminyl asparagine; N-acetylgalactosaminyl asparagine and N4 glucosyl asparagine also occur. This modification typically occurs in extracellular peptides with an N-X-(ST) motif. Partial modification has been observed to occur with cysteine, rather than serine or threonine, in the third position; secondary structure features are important, and proline in the second or fourth positions inhibits modification.
    GO:0006486    protein glycosylation    A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PGLD_CAMJE | Q0P9D1: 2npo 2vhe 3bfp 3bsw 3bsy 5t2y 5tyh

(-) Related Entries Specified in the PDB File

2npo STRUCTURAL GENOMICS
3bsw
3bsy