5T2Y - JenaLib

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Title :   CRYSTAL STRUCTURE OF C. JEJUNI PGLD IN COMPLEX WITH 5-METHYL-4-(METHYLAMINO)-2-PHENETHYLTHIENO[2,3-D]PYRIMIDINE-6-CARBOXYLIC ACID

Authors :   J. W. De Schutter, B. Imperiali

Date :   24 Aug 16 (Deposition) - 22 Feb 17 (Release) - 22 Mar 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.94

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (3x)
Biol. Unit 2: B  (3x)

Keywords :   Campylobacter Jejuni Bacterial Acetyltransferase Inhibitor Complex, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. W. De Schutter, J. P. Morrison, M. J. Morrison, A. Ciulli, B. Imperiali
Targeting Bacillosamine Biosynthesis In Bacterial Pathogens Development Of Inhibitors To A Bacterial Amino-Sugar Acetyltransferase From Campylobacter Jejuni.
J. Med. Chem. V. 60 2099 2017
PubMed-ID: 28182413 | Reference-DOI: 10.1021/ACS.JMEDCHEM.6B01869

Molecule 1 - UDP-N-ACETYLBACILLOSAMINE N-ACETYLTRANSFERASE
	Chains	:	A, B
	EC Number	:	2.3.1.203
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	PGLD, CJ1123C
	Organism Taxid	:	192222
	Strain	:	ATCC 700819 / NCTC 11168
	Synonym	:	PROTEIN GLYCOSYLATION D,UDP-4-AMINO-4,6-DIDEOXY-N-ACETYL- ALPHA-D-GLUCOSAMINE N-ACETYLTRANSFERASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (3x)	:	A
Biological Unit 2 (3x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 7)

No.	Name	Count	Type	Full Name
1	753	2	Ligand/Ion	5-METHYL-4-(METHYLAMINO)-2-(2-PHENYLETHYL)THIENO[2,3-D]PYRIMIDINE-6-CARBOXYLIC ACID
2	DMS	2	Ligand/Ion	DIMETHYL SULFOXIDE
3	GOL	3	Ligand/Ion	GLYCEROL

Biological Unit 1 (3, 12)

No.	Name	Count	Type	Full Name
1	753	3	Ligand/Ion	5-METHYL-4-(METHYLAMINO)-2-(2-PHENYLETHYL)THIENO[2,3-D]PYRIMIDINE-6-CARBOXYLIC ACID
2	DMS	3	Ligand/Ion	DIMETHYL SULFOXIDE
3	GOL	6	Ligand/Ion	GLYCEROL

Biological Unit 2 (3, 9)

No.	Name	Count	Type	Full Name
1	753	3	Ligand/Ion	5-METHYL-4-(METHYLAMINO)-2-(2-PHENYLETHYL)THIENO[2,3-D]PYRIMIDINE-6-CARBOXYLIC ACID
2	DMS	3	Ligand/Ion	DIMETHYL SULFOXIDE
3	GOL	3	Ligand/Ion	GLYCEROL

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:136 , GLY A:154 , ILE A:155 , LEU A:160 , PRO A:161 , GLY A:173 , VAL A:178 , VAL A:188 , PRO A:191 , GOL A:203 , HOH A:349 , HOH A:359 , HOH A:398	binding site for residue 753 A 201
2	AC2	SOFTWARE	HOH A:340 , HOH A:344 , HOH A:382 , HOH A:398	binding site for residue GOL A 202
3	AC3	SOFTWARE	HIS A:125 , SER A:136 , ALA A:142 , GLY A:143 , PRO A:161 , 753 A:201 , HOH A:359 , HOH A:370 , HOH A:378	binding site for residue GOL A 203
4	AC4	SOFTWARE	PRO A:101 , ASN A:106	binding site for residue DMS A 204
5	AC5	SOFTWARE	SER B:136 , PHE B:152 , GLY B:154 , ILE B:155 , GLY B:173 , HOH B:308 , HOH B:325 , HOH B:354 , HOH B:357	binding site for residue 753 B 201
6	AC6	SOFTWARE	HOH B:301 , HOH B:323 , HOH B:357	binding site for residue GOL B 202
7	AC7	SOFTWARE	LEU B:84 , SER B:86 , ILE B:105 , ASN B:106 , HOH B:470	binding site for residue DMS B 203

(no "SS Bond" information available for 5T2Y)

Asymmetric Unit

No.	Residues
1	Val A:190	-	Pro A:191
2	Val B:190	-	Pro B:191

(no "SAP(SNP)/Variant" information available for 5T2Y)

(no "PROSITE Motif" information available for 5T2Y)

(no "Exon" information available for 5T2Y)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhhhhhhh..eeeee.............eeee...hhhhhhhhhhhhhhh......ee....ee....ee......ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee........eee....ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5t2y A   2 ARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFMKFESTLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM 195
                                    11        21        31     || 43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  
                                                              37|                                                                                                                                                           
                                                               40

Chain B from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhhhhhhh..eeeee.............eeee...hhhhhhhhhhhhhhh..ee..ee....ee....ee......ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee........eee....ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5t2y B   2 ARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFMKFESTLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM 195
                                    11        21        31     || 43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  
                                                              37|                                                                                                                                                           
                                                               40

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5T2Y)

(no "CATH Domain" information available for 5T2Y)

(no "Pfam Domain" information available for 5T2Y)

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	Cis Peptide Bonds
		Val A:190 - Pro A:191	[ RasMol ]
		Val B:190 - Pro B:191	[ RasMol ]

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	5t2y
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	PGLD_CAMJE \| Q0P9D1	:	2npo 2vhe 3bfp 3bss 3bsw 3bsy 5tyh

Description

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Ligands, Modified Residues, Ions (3, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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