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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE TRANSFERASE FROM CAMPYLOBACTER JEJUNI SUBSP. JEJUNI NCTC 11168
 
Authors :  X. Jin, A. Bera, S. Wasserman, D. Smith, J. M. Sauder, S. K. Burley, L. Sha York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  27 Oct 06  (Deposition) - 07 Nov 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Transferase, Structural Genomics, Psi, Protein Structure Initiative, New York Structural Genomix Research Consortium, Nysgxrc, New York Sgx Research Center For Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Jin, A. Bera, S. Wasserman, D. Smith, J. M. Sauder, S. K. Burley, L. Shapiro
Crystal Structure Of Putative Transferase From Campylobacte Jejuni Subsp. Jejuni Nctc 11168
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACETYLTRANSFERASE
    Chains: A
    EC Number: 2.7.7.23
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PSB3 (TC)
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PGLD
    Organism Scientific: CAMPYLOBACTER JEJUNI
    Organism Taxid: 197

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2NPO)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:193
 aligned with PGLD_CAMJE | Q0P9D1 from UniProtKB/Swiss-Prot  Length:195

    Alignment length:195
                                                                                                                                                                                                                          195  
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192  |  
           PGLD_CAMJE     3 RTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFESTLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM--   -
               SCOP domains d2npoa1 A  :3-197 Acetyltransferase PglD                                                                                                                                                            SCOP domains
               CATH domains 2npoA01 A  :3-76  [code=3.40.50.20, no name defined]                      2npoA02 A:77-188 Hexapeptide repeat proteins                                                                    --------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.--hhhhhhhhhhhhh...eeeee..hhhhhhhhhh...eeee...hhhhhhhhhhhhhh.......ee....ee....ee......ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee........ee.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2npo A   3 RTEKIYIYG--GHGLVCEDVAKNMGYKECIFLDDFKGMKFESTLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRMEG 197
                                    |- |      22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192     
                                   11 14
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2NPO)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (PGLD_CAMJE | Q0P9D1)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
    GO:0016747    transferase activity, transferring acyl groups other than amino-acyl groups    Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
biological process
    GO:0018279    protein N-linked glycosylation via asparagine    The glycosylation of protein via the N4 atom of peptidyl-asparagine forming N4-glycosyl-L-asparagine; the most common form is N-acetylglucosaminyl asparagine; N-acetylgalactosaminyl asparagine and N4 glucosyl asparagine also occur. This modification typically occurs in extracellular peptides with an N-X-(ST) motif. Partial modification has been observed to occur with cysteine, rather than serine or threonine, in the third position; secondary structure features are important, and proline in the second or fourth positions inhibits modification.
    GO:0006486    protein glycosylation    A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.

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        PGLD_CAMJE | Q0P9D1: 2vhe 3bfp 3bss 3bsw 3bsy 5t2y 5tyh

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