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(-) Description

Title :  COENZYME-INDUCED CONFORMATIONAL CHANGES IN GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILLUS
 
Authors :  T. Skarzynski, A. J. Wonacott
Date :  29 Jun 89  (Deposition) - 15 Oct 89  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  O,P,Q,R
Keywords :  Oxidoreductase(Aldehyde(D)-Nad(A)) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Skarzynski, A. J. Wonacott
Coenzyme-Induced Conformational Changes In Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Stearothermophilus.
J. Mol. Biol. V. 203 1097 1988
PubMed-ID: 3210237  |  Reference-DOI: 10.1016/0022-2836(88)90130-1
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
    Cell Line: 293
    Chains: O, P, Q, R
    EC Number: 1.2.1.12
    Engineered: YES
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : OPQR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1SO48Ligand/IonSULFATE ION

(-) Sites  (36, 36)

Asymmetric Unit (36, 36)
No.NameEvidenceResiduesDescription
01ABOAUTHORLEU O:33 , THR O:96 , ARG O:77RESIDUES INTERACT WITH THE ADENINE BASE OF NAD
02ABPAUTHORLEU P:33 , THR P:96 , ARG P:77RESIDUES INTERACT WITH THE ADENINE BASE OF NAD
03ABQAUTHORLEU Q:33 , THR Q:96 , ARG Q:77RESIDUES INTERACT WITH THE ADENINE BASE OF NAD
04ABRAUTHORLEU R:33 , THR R:96 , ARG R:77RESIDUES INTERACT WITH THE ADENINE BASE OF NAD
05AC1SOFTWARETHR O:179 , ASP O:181 , ARG O:195 , ARG O:231 , HOH O:433BINDING SITE FOR RESIDUE SO4 O 338
06AC2SOFTWARESER O:148 , THR O:150 , THR O:208 , GLY O:209 , ALA O:210 , HOH O:376 , HOH O:410BINDING SITE FOR RESIDUE SO4 O 339
07AC3SOFTWARETHR P:179 , ASP P:181 , ARG P:195 , ARG P:231BINDING SITE FOR RESIDUE SO4 P 338
08AC4SOFTWARESER P:148 , THR P:208 , GLY P:209 , ALA P:210 , HOH P:383 , HOH P:440BINDING SITE FOR RESIDUE SO4 P 339
09AC5SOFTWARETHR Q:179 , ASP Q:181 , ARG Q:195 , ARG Q:231 , HOH Q:412BINDING SITE FOR RESIDUE SO4 Q 338
10AC6SOFTWARESER Q:148 , THR Q:208 , GLY Q:209 , ALA Q:210 , HOH Q:390BINDING SITE FOR RESIDUE SO4 Q 339
11AC7SOFTWARETHR R:179 , ASN R:180 , ASP R:181 , ARG R:195 , ARG R:231BINDING SITE FOR RESIDUE SO4 R 338
12AC8SOFTWARESER R:148 , THR R:208 , GLY R:209 , ALA R:210 , HOH R:393 , HOH R:399 , HOH R:460BINDING SITE FOR RESIDUE SO4 R 339
13APOAUTHORARG O:10 , ASN O:180RESIDUES INTERACT WITH PHOSPHATE OF THE ADENOSINE NUCLEOTIDE OF NAD
14APPAUTHORARG P:10 , ASN P:180RESIDUES INTERACT WITH PHOSPHATE OF THE ADENOSINE NUCLEOTIDE OF NAD
15APQAUTHORARG Q:10 , ASN Q:180RESIDUES INTERACT WITH PHOSPHATE OF THE ADENOSINE NUCLEOTIDE OF NAD
16APRAUTHORARG R:10 , ASN R:180RESIDUES INTERACT WITH PHOSPHATE OF THE ADENOSINE NUCLEOTIDE OF NAD
17AROAUTHORASP O:32RESIDUES INTERACT WITH THE ADENOSINE RIBOSE OF NAD
18ARPAUTHORASP P:32RESIDUES INTERACT WITH THE ADENOSINE RIBOSE OF NAD
19ARQAUTHORASP Q:32RESIDUES INTERACT WITH THE ADENOSINE RIBOSE OF NAD
20ARRAUTHORASP R:32RESIDUES INTERACT WITH THE ADENOSINE RIBOSE OF NAD
21CTOAUTHORCYS O:149 , HIS O:176RESIDUES INVOLVED IN CATALYSIS
22CTPAUTHORCYS P:149 , HIS P:176RESIDUES INVOLVED IN CATALYSIS
23CTQAUTHORCYS Q:149 , HIS Q:176RESIDUES INVOLVED IN CATALYSIS
24CTRAUTHORCYS R:149 , HIS R:176RESIDUES INVOLVED IN CATALYSIS
25NBOAUTHORILE O:11 , CYS O:149 , SER O:119 , ASN O:313 , TYR O:317RESIDUES INTERACT WITH THE NICOTINAMIDE BASE OF NAD
26NBPAUTHORILE P:11 , CYS P:149 , SER P:119 , ASN P:313 , TYR P:317RESIDUES INTERACT WITH THE NICOTINAMIDE BASE OF NAD
27NBQAUTHORILE Q:11 , CYS Q:149 , SER Q:119 , ASN Q:313 , TYR Q:317RESIDUES INTERACT WITH THE NICOTINAMIDE BASE OF NAD
28NBRAUTHORILE R:11 , CYS R:149 , SER R:119 , ASN R:313 , TYR R:317RESIDUES INTERACT WITH THE NICOTINAMIDE BASE OF NAD
29NPOAUTHORILE O:11RESIDUES INTERACT WITH THE PHOSPHATE OF THE NICOTINAMIDE NUCLEOTIDE OF NAD
30NPPAUTHORILE P:11RESIDUES INTERACT WITH THE PHOSPHATE OF THE NICOTINAMIDE NUCLEOTIDE OF NAD
31NPQAUTHORILE Q:11RESIDUES INTERACT WITH THE PHOSPHATE OF THE NICOTINAMIDE NUCLEOTIDE OF NAD
32NPRAUTHORILE R:11RESIDUES INTERACT WITH THE PHOSPHATE OF THE NICOTINAMIDE NUCLEOTIDE OF NAD
33NROAUTHORSER O:119RESIDUES INTERACT WITH THE RIBOSE OF THE NICOTINAMIDE NUCLEOTIDE OF NAD
34NRPAUTHORSER P:119RESIDUES INTERACT WITH THE RIBOSE OF THE NICOTINAMIDE NUCLEOTIDE OF NAD
35NRQAUTHORSER Q:119RESIDUES INTERACT WITH THE RIBOSE OF THE NICOTINAMIDE NUCLEOTIDE OF NAD
36NRRAUTHORSER R:119RESIDUES INTERACT WITH THE RIBOSE OF THE NICOTINAMIDE NUCLEOTIDE OF NAD

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GD1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GD1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GD1)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3P_GEOSE150-157
 
 
 		  4O:147-154
P:147-154
Q:147-154
R:147-154

(-) Exons   (0, 0)

(no "Exon" information available for 2GD1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain O from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d2gd1o1 O:0-148,O:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d2gd1o2 O:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d2gd1o1               SCOP domains
               CATH domains 2gd1O01 O:0-147,O:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        2gd1O02 O:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            2gd1O01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhh..........eeee..hhhhhhhhhh..........eeeee..eeee....eeee.........hhhh..eeeee.......hhhhhhhhh....eeee........eeee...............eeeehhhhhhhhhhhhhhhhh.....eeeeeeeee........................eeee..hhhhhh.........eeeeeeeee....eeeeeeeee....hhhhhhhhhhhhhh.......eeee..............eeeeeeeeeeee...eeeeeeeehhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2gd1 O    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190                                                                                                                                               


Chain P from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d2gd1p1 P:0-148,P:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d2gd1p2 P:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d2gd1p1               SCOP domains
               CATH domains 2gd1P01 P:0-147,P:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        2gd1P02 P:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            2gd1P01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhh..........eeee..hhhhhhhhhh..........eeeee..eeee....eeee.........hhhh..eeeee.......hhhhhhhhh....eeee........eeee...............eeeehhhhhhhhhhhhhhhhh.....eeeeeeeee........................eeee..hhhhhh.........eeeeeeeee....eeeeeeeee....hhhhhhhhhhhhhh.......eeee..............eeeeeeeeeeee...eeeeeeeehhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2gd1 P    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190                                                                                                                                               


Chain Q from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d2gd1q1 Q:0-148,Q:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d2gd1q2 Q:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d2gd1q1               SCOP domains
               CATH domains 2gd1Q01 Q:0-147,Q:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        2gd1Q02 Q:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            2gd1Q01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhh..........eeee..hhhhhhhhhh..........eeeee..eeee....eeee.........hhhh..eeeee.......hhhhhhhhh....eeee........eeee...............eeeehhhhhhhhhhhhhhhhh.....eeeeeeeee........................eeee..hhhhhh.........eeeeeeeee....eeeeeeeee....hhhhhhhhhhhhhh.......eeee..............eeeeeeeeeeee...eeeeeeeehhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2gd1 Q    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190                                                                                                                                               


Chain R from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d2gd1r1 R:0-148,R:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d2gd1r2 R:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d2gd1r1               SCOP domains
               CATH domains 2gd1R01 R:0-147,R:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        2gd1R02 R:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            2gd1R01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhh..........eeee..hhhhhhhhhh..........eeeee..eeee....eeee.........hhhh..eeeee.......hhhhhhhhh....eeee........eeee...............eeeehhhhhhhhhhhhhhhhh.....eeeeeeeee........................eeee..hhhhhh.........eeeeeeeee....eeeeeeeee....hhhhhhhhhhhhhh.......eeee..............eeeeeeeeeeee...eeeeeeeehhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2gd1 R    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GD1)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain O,P,Q,R   (G3P_GEOSE | P00362)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0004365    glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity    Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
    GO:0006006    glucose metabolic process    The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2gd1)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)
Insightii
  tetraner: ribbon, secondary structure; active sites, sulfate
[ mono GIF format | stereo GIF format ]
  tetramer: ative sites, sulfate, alone
[ mono GIF format | stereo GIF format ]
  tetramer: ribbon, active sites, sulfate
[ mono GIF format | stereo GIF format ]
  monomer: ribbon, secondary structure, active sites, sulfate
[ mono GIF format | stereo GIF format ]
Setor
  monomer, ribbon,secondary structure, active sites, sulfate, labeling
[ mono GIF format | stereo GIF format ]
  tetramer: spacefill
[ mono GIF format | stereo GIF format ]
Distance Plot
  monomer: representative atom: CA
[ mono GIF format | mono PDF format ]

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  2gd1
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  G3P_GEOSE | P00362
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  1.2.1.12
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G3P_GEOSE | P00362: 1dbv 1gd1 1npt 1nq5 1nqa 1nqo 2dbv 3cmc 3dbv 4dbv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2GD1)