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(-) Description

Title :  GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH CYS 149 REPLACED BY ALA COMPLEXED WITH NAD+
 
Authors :  C. Didierjean, C. Corbier, M. Fatih, F. Favier, S. Boschi-Muller, G. Branlant, A. Aubry
Date :  20 Jan 03  (Deposition) - 22 Apr 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.18
Chains :  Asym./Biol. Unit :  O,P,Q,R
Keywords :  Glycolysis, Oxidoreductase, Nad (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Didierjean, C. Corbier, M. Fatih, F. Favier, S. Boschi-Muller, G. Branlant, A. Aubry
Crystal Structure Of Two Ternary Complexes Of Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Stearothermophilus With Nad And D-Glyceraldehyde-3-Phosphate
J. Biol. Chem. V. 278 12968 2003
PubMed-ID: 12569100  |  Reference-DOI: 10.1074/JBC.M211040200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE
    Chains: O, P, Q, R
    EC Number: 1.2.1.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBLUESCRIPTII
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GAP
    Mutation: YES
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422
    Synonym: GAPDH

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : OPQR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2SO44Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR O:179 , ASP O:181 , ARG O:195 , ARG O:231 , NAD O:1336 , HOH O:1353 , HOH O:1563 , HOH O:1602BINDING SITE FOR RESIDUE SO4 O 1338
2AC2SOFTWARETHR P:179 , ASP P:181 , ARG P:195 , ARG P:231 , NAD P:2336 , HOH P:2353 , HOH P:2524BINDING SITE FOR RESIDUE SO4 P 2338
3AC3SOFTWARETHR Q:179 , ASP Q:181 , ARG Q:195 , ARG Q:231 , NAD Q:3336 , HOH Q:3547BINDING SITE FOR RESIDUE SO4 Q 3338
4AC4SOFTWARETHR R:179 , ASP R:181 , ARG R:195 , ARG R:231 , NAD R:4336 , HOH R:4353 , HOH R:4440 , HOH R:4485 , HOH R:4514 , HOH R:4610BINDING SITE FOR RESIDUE SO4 R 4338
5AC5SOFTWAREGLY O:7 , GLY O:9 , ARG O:10 , ILE O:11 , ASN O:31 , ASP O:32 , LEU O:33 , ARG O:77 , SER O:95 , THR O:96 , GLY O:97 , SER O:119 , ALA O:120 , ASN O:180 , ASN O:313 , TYR O:317 , SO4 O:1338 , HOH O:1353 , HOH O:1354 , HOH O:1356 , HOH O:1367 , HOH O:1380 , HOH O:1388 , HOH O:1478 , HOH O:1539 , HOH O:1576 , HOH O:1577 , HOH O:1595 , HOH O:1610 , HOH O:4505 , HOH O:4507BINDING SITE FOR RESIDUE NAD O 1336
6AC6SOFTWAREGLY P:7 , PHE P:8 , GLY P:9 , ARG P:10 , ILE P:11 , ASN P:31 , ASP P:32 , GLU P:76 , ARG P:77 , SER P:95 , THR P:96 , GLY P:97 , SER P:119 , ALA P:120 , ASN P:180 , ASN P:313 , TYR P:317 , SO4 P:2338 , HOH P:2353 , HOH P:2354 , HOH P:2356 , HOH P:2366 , HOH P:2367 , HOH P:2380 , HOH P:2388 , HOH P:2416 , HOH P:2478 , HOH P:2561 , HOH P:2582 , HOH P:2583 , HOH P:2603 , HOH P:2604 , LEU Q:187 , HOH Q:2373BINDING SITE FOR RESIDUE NAD P 2336
7AC7SOFTWARELEU P:187 , GLY Q:7 , GLY Q:9 , ARG Q:10 , ILE Q:11 , ASN Q:31 , ASP Q:32 , ARG Q:77 , SER Q:95 , THR Q:96 , GLY Q:97 , PHE Q:99 , SER Q:119 , ALA Q:120 , ASN Q:180 , ASN Q:313 , TYR Q:317 , HOH Q:2508 , HOH Q:2519 , HOH Q:2637 , SO4 Q:3338 , HOH Q:3354 , HOH Q:3356 , HOH Q:3367 , HOH Q:3373 , HOH Q:3380 , HOH Q:3388 , HOH Q:3415 , HOH Q:3430 , HOH Q:3546 , HOH Q:3547BINDING SITE FOR RESIDUE NAD Q 3336
8AC8SOFTWAREHOH O:4373 , GLY R:7 , GLY R:9 , ARG R:10 , ILE R:11 , ASN R:31 , ASP R:32 , LEU R:33 , ARG R:77 , SER R:95 , THR R:96 , GLY R:97 , SER R:119 , ALA R:120 , ASN R:180 , ASN R:313 , TYR R:317 , SO4 R:4338 , HOH R:4353 , HOH R:4354 , HOH R:4356 , HOH R:4366 , HOH R:4367 , HOH R:4380 , HOH R:4388 , HOH R:4390 , HOH R:4415 , HOH R:4416 , HOH R:4430 , HOH R:4478 , HOH R:4610BINDING SITE FOR RESIDUE NAD R 4336

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NPT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NPT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NPT)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3P_GEOSE150-157
 
 
 		  4O:147-154
P:147-154
Q:147-154
R:147-154

(-) Exons   (0, 0)

(no "Exon" information available for 1NPT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain O from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d1npto1 O:0-148,O:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d1npto2 O:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d1npto1               SCOP domains
               CATH domains 1nptO01 O:0-147,O:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        1nptO02 O:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            1nptO01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhh....eeeeeee...hhhhhhhhhhh..........eeee..eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee.........................eeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1npt O    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190                                                                                                                                               


Chain P from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d1nptp1 P:0-148,P:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d1nptp2 P:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d1nptp1               SCOP domains
               CATH domains 1nptP01 P:0-147,P:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        1nptP02 P:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            1nptP01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhh....eeeeeee...hhhhhhhhhhee...ee....eeee..eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee.........................eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1npt P    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190                                                                                                                                               


Chain Q from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d1nptq1 Q:0-148,Q:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d1nptq2 Q:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d1nptq1               SCOP domains
               CATH domains 1nptQ01 Q:0-147,Q:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        1nptQ02 Q:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            1nptQ01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhee...ee....eeee..eeee..eeeeee...hhhhh.hhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee.........................eeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1npt Q    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190                                                                                                                                               


Chain R from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d1nptr1 R:0-148,R:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d1nptr2 R:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d1nptr1               SCOP domains
               CATH domains 1nptR01 R:0-147,R:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        1nptR02 R:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            1nptR01              CATH domains
           Pfam domains (1) -Gp_dh_N-1nptR05 R:1-149                                                                                                                               ----Gp_dh_C-1nptR01 R:154-311                                                                                                                                    ---------------------- Pfam domains (1)
           Pfam domains (2) -Gp_dh_N-1nptR06 R:1-149                                                                                                                               ----Gp_dh_C-1nptR02 R:154-311                                                                                                                                    ---------------------- Pfam domains (2)
           Pfam domains (3) -Gp_dh_N-1nptR07 R:1-149                                                                                                                               ----Gp_dh_C-1nptR03 R:154-311                                                                                                                                    ---------------------- Pfam domains (3)
           Pfam domains (4) -Gp_dh_N-1nptR08 R:1-149                                                                                                                               ----Gp_dh_C-1nptR04 R:154-311                                                                                                                                    ---------------------- Pfam domains (4)
         Sec.struct. author .eeeeee..hhhhhhhhhhhh....eeeeeee...hhhhhhhhhhee...ee....eee...eeee..eeeeee...hhhhh.hhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee.........................eeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1npt R    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Clan: GADPH_aa-bio_dh (59)
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain O,P,Q,R   (G3P_GEOSE | P00362)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0004365    glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity    Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
    GO:0006006    glucose metabolic process    The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        G3P_GEOSE | P00362: 1dbv 1gd1 1nq5 1nqa 1nqo 2dbv 2gd1 3cmc 3dbv 4dbv

(-) Related Entries Specified in the PDB File

1nq5 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH CYS 149 REPLACED BY SER COMPLEXED WITH NAD+
1nqa GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH CYS 149 REPLACED BY ALA COMPLEXED WITH NAD+ AND D- GLYCERALDEHYDE-3-PHOSPHATE
1nqo GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH CYS 149 REPLACED BY SER COMPLEXED WITH NAD+ AND D- GLYCERALDEHYDE-3-PHOSPHATE