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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH ASP 32 REPLACED BY GLY, LEU 187 REPLACED BY ALA, AND PRO 188 REPLACED BY SER COMPLEXED WITH NADP+

Authors :   C. Didierjean, S. Rahuel-Clermont, B. Vitoux, O. Dideberg, G. Branlant, A. Aubry

Date :   19 Dec 96 (Deposition) - 07 Jul 97 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym./Biol. Unit : O,P,Q,R

Keywords :   Oxidoreductase, Nad(P) Selectivity (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Didierjean, S. Rahuel-Clermont, B. Vitoux, O. Dideberg, G. Branlant, A. Aubry
A Crystallographic Comparison Between Mutated Glyceraldehyde-3-Phosphate Dehydrogenases From Bacillus Stearothermophilus Complexed With Either Nad+ Or Nadp+.
J. Mol. Biol. V. 268 739 1997
PubMed-ID: 9175858 | Reference-DOI: 10.1006/JMBI.1997.0998
(for further references see the PDB file header)

Molecule 1 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
	Cellular Location	:	CYTOPLASM
	Chains	:	O, P, Q, R
	EC Number	:	1.2.1.12
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Gene	:	BACILLUS STEAROTHERMOPHILUS
	Expression System Strain	:	DF221
	Expression System Taxid	:	562
	Gene	:	GAP
	Mutation	:	YES
	Organism Scientific	:	GEOBACILLUS STEAROTHERMOPHILUS
	Organism Taxid	:	1422
	Other Details	:	COMPLEXED WITH NADP+
	Synonym	:	GAPDH

		1	2	3	4
Asymmetric/Biological Unit	:	O	P	Q	R

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 12)

No.	Name	Count	Type	Full Name
1	NDP	4	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
2	SO4	8	Ligand/Ion	SULFATE ION

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR O:179 , ARG O:195 , ARG O:231 , NDP O:336 , HOH O:400	BINDING SITE FOR RESIDUE SO4 O 338
02	AC2	SOFTWARE	SER O:148 , THR O:208 , GLY O:209 , ALA O:210 , HOH O:399	BINDING SITE FOR RESIDUE SO4 O 339
03	AC3	SOFTWARE	THR P:179 , ASP P:181 , ARG P:195 , ARG P:231 , NDP P:336 , HOH P:351 , HOH P:400 , HOH P:408 , HOH P:411	BINDING SITE FOR RESIDUE SO4 P 338
04	AC4	SOFTWARE	SER P:148 , THR P:208 , GLY P:209 , ALA P:210 , HOH P:349 , HOH P:387 , HOH P:424 , HOH P:427	BINDING SITE FOR RESIDUE SO4 P 339
05	AC5	SOFTWARE	THR Q:179 , ASP Q:181 , ARG Q:231 , NDP Q:336 , HOH Q:349 , HOH Q:396	BINDING SITE FOR RESIDUE SO4 Q 338
06	AC6	SOFTWARE	SER Q:148 , THR Q:208 , GLY Q:209 , ALA Q:210 , HOH Q:418	BINDING SITE FOR RESIDUE SO4 Q 339
07	AC7	SOFTWARE	THR R:179 , ASP R:181 , ARG R:195 , ARG R:231 , NDP R:336 , HOH R:356 , HOH R:405	BINDING SITE FOR RESIDUE SO4 R 338
08	AC8	SOFTWARE	SER R:148 , THR R:208 , GLY R:209 , ALA R:210 , HOH R:354 , HOH R:387 , HOH R:427	BINDING SITE FOR RESIDUE SO4 R 339
09	AC9	SOFTWARE	ASN O:6 , GLY O:7 , GLY O:9 , ARG O:10 , ILE O:11 , ASN O:31 , GLY O:32 , LEU O:33 , ARG O:77 , SER O:95 , THR O:96 , GLY O:97 , SER O:119 , ALA O:120 , CYS O:149 , ASN O:180 , ASN O:313 , TYR O:317 , SO4 O:338 , HOH O:347 , HOH O:355 , HOH O:356 , HOH O:362 , HOH O:368 , HOH O:370 , HOH O:371 , HOH O:422 , HOH O:423 , HOH O:424 , SER R:188	BINDING SITE FOR RESIDUE NDP O 336
10	BC1	SOFTWARE	GLY P:9 , ARG P:10 , ILE P:11 , ASN P:31 , LEU P:33 , GLU P:76 , ARG P:77 , SER P:95 , THR P:96 , GLY P:97 , ARG P:98 , PHE P:99 , SER P:119 , ALA P:120 , CYS P:149 , ASN P:180 , ASN P:313 , GLU P:314 , SO4 P:338 , HOH P:351 , HOH P:352 , HOH P:353 , HOH P:360 , HOH P:365 , HOH P:371 , HOH P:376 , HOH P:390 , HOH P:435 , SER Q:188 , HOH Q:343	BINDING SITE FOR RESIDUE NDP P 336
11	BC2	SOFTWARE	SER P:188 , PHE Q:8 , GLY Q:9 , ARG Q:10 , ILE Q:11 , ASN Q:31 , LEU Q:33 , ARG Q:77 , SER Q:95 , THR Q:96 , GLY Q:97 , SER Q:119 , ALA Q:120 , ASN Q:180 , ASN Q:313 , TYR Q:317 , SO4 Q:338 , HOH Q:350 , HOH Q:361 , HOH Q:362 , HOH Q:365 , HOH Q:371 , HOH Q:375 , HOH Q:421 , HOH Q:422 , HOH Q:423	BINDING SITE FOR RESIDUE NDP Q 336
12	BC3	SOFTWARE	SER O:188 , GLY R:7 , PHE R:8 , GLY R:9 , ARG R:10 , ILE R:11 , ASN R:31 , GLY R:32 , LEU R:33 , ARG R:77 , SER R:95 , THR R:96 , GLY R:97 , SER R:119 , ALA R:120 , CYS R:149 , ASN R:180 , ASN R:313 , TYR R:317 , SO4 R:338 , HOH R:356 , HOH R:357 , HOH R:366 , HOH R:367 , HOH R:375 , HOH R:381 , HOH R:432 , HOH R:433 , HOH R:434	BINDING SITE FOR RESIDUE NDP R 336

(no "SS Bond" information available for 2DBV)

(no "Cis Peptide Bond" information available for 2DBV)

(no "SAP(SNP)/Variant" information available for 2DBV)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GAPDH	PS00071	Glyceraldehyde 3-phosphate dehydrogenase active site.	G3P_GEOSE	150-157	4	O:147-154 P:147-154 Q:147-154 R:147-154

(no "Exon" information available for 2DBV)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain O from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d2dbvo1 O:0-148,O:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d2dbvo2 O:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d2dbvo1               SCOP domains
               CATH domains 2dbvO01 O:0-147,O:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        2dbvO02 O:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            2dbvO01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhh..........eeee..hhhhhhhhhh..........eeeee..eeee....eeee.........hhhh..eeeee.......hhhhhhhhh....eeee........eeee...............eeeehhhhhhhhhhhhhhhhh.....eeeeeeeee........................eeee..hhhhhh.........eeeeeeeee....eeeeeeeee....hhhhhhhhhhhhhh.......eeee..............eeeeeeeeeeee...eeeeeeeehhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2dbv O    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNGLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDASHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190

Chain P from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d2dbvp1 P:0-148,P:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d2dbvp2 P:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d2dbvp1               SCOP domains
               CATH domains 2dbvP01 P:0-147,P:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        2dbvP02 P:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            2dbvP01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhh..........eeee..hhhhhhhhhh..........eeeee..eeee....eeee.........hhhh..eeeee.......hhhhhhhhh....eeee........eeee...............eeeehhhhhhhhhhhhhhhhh.....eeeeeeeee........................eeee..hhhhhh.........eeeeeeeee....eeeeeeeee....hhhhhhhhhhhhhh.......eeee..............eeeeeeeeeeee...eeeeeeeehhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2dbv P    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNGLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDASHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190

Chain Q from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d2dbvq1 Q:0-148,Q:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d2dbvq2 Q:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d2dbvq1               SCOP domains
               CATH domains 2dbvQ01 Q:0-147,Q:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        2dbvQ02 Q:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            2dbvQ01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhh..........eeee..hhhhhhhhhh..........eeeee..eeee....eeee.........hhhh..eeeee.......hhhhhhhhh....eeee........eeee...............eeeehhhhhhhhhhhhhhhhh.....eeeeeeeee........................eeee..hhhhhh.........eeeeeeeee....eeeeeeeee....hhhhhhhhhhhhhh.......eeee..............eeeeeeeeeeee...eeeeeeeehhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2dbv Q    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNGLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDASHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190

Chain R from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d2dbvr1 R:0-148,R:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d2dbvr2 R:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d2dbvr1               SCOP domains
               CATH domains 2dbvR01 R:0-147,R:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        2dbvR02 R:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            2dbvR01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhh..........eeee..hhhhhhhhhh..........eeeee..eeee....eeee.........hhhh..eeeee.......hhhhhhhhh....eeee........eeee...............eeeehhhhhhhhhhhhhhhhh.....eeeeeeeee........................eeee..hhhhhh.........eeeeeeeee....eeeeeeeee....hhhhhhhhhhhhhh.......eeee..............eeeeeeeeeeee...eeeeeeeehhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2dbv R    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNGLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDASHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Dihydrodipicolinate Reductase; domain 2 (182)

Homologous Superfamily: Dihydrodipicolinate Reductase; domain 2 (178)

Geobacillus stearothermophilus. Organism_taxid: 1422. (8)

1a	2dbvO02	O:148-313
1b	2dbvP02	P:148-313
1c	2dbvQ02	Q:148-313
1d	2dbvR02	R:148-313

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Geobacillus stearothermophilus. Organism_taxid: 1422. (10)

2a	2dbvO01	O:0-147,O:314-333
2b	2dbvP01	P:0-147,P:314-333
2c	2dbvQ01	Q:0-147,Q:314-333
2d	2dbvR01	R:0-147,R:314-333

(no "Pfam Domain" information available for 2DBV)

Asymmetric/Biological Unit(hide GO term definitions)

Chain O,P,Q,R (G3P_GEOSE | P00362)

molecular function
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0004365	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
	GO:0006006	glucose metabolic process	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2dbv)

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Access by PDB/NDB ID
	2dbv
		Family and Domain Information	:	ProDom \| SYSTERS
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	G3P_GEOSE \| P00362
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		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.2.1.12
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

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		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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Access by UniProt ID/Accession number
	G3P_GEOSE \| P00362
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	G3P_GEOSE \| P00362	:	1dbv 1gd1 1npt 1nq5 1nqa 1nqo 2gd1 3cmc 3dbv 4dbv

(no "Related Entries Specified in the PDB File" available for 2DBV)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 12)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 8)

CATH Domains (2, 8)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

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Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File