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Sequence, Chains, Asymmetric and Biological Units

Title COENZYME-INDUCED CONFORMATIONAL CHANGES IN GLYCERALDEHYDE-3- PHOSPHATE DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILLUS
Keywords OXIDOREDUCTASE(ALDEHYDE(D)-NAD(A))
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2GD1     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  O 334 2525 0
2  Protein   APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  P 334 2525 0
3  Protein   APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  Q 334 2525 0
4  Protein   APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  R 334 2525 0
5  Ligand   APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  O 2 0 10
6  Ligand   APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  P 2 0 10
7  Ligand   APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  Q 2 0 10
8  Ligand   APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  R 2 0 10
9 Water     504 0 504
total       1848 10100 544
Proteins
Unit 1 ALA0 VAL1 LYS2 VAL3 GLY4 ILE5 ASN6 GLY7 PHE8 GLY9 ARG10 ILE11 GLY12 ARG13 ASN14 VAL15 PHE16 ARG17 ALA18 ALA19 LEU20 LYS21 ASN22 PRO23 ASP24 ILE25 GLU26 VAL27 VAL28 ALA29 VAL30 ASN31 ASP32 LEU33 THR34 ASP36 ALA37 ASN38 THR39 LEU40 ALA41 HIS42 LEU43 LEU44 LYS45 TYR46 ASP47 SER48 VAL49 HIS50 GLY51 ARG52 LEU53 ASP54 ALA55 GLU56 VAL57 SER58 VAL59 ASN60 GLY61 ASN62 ASN63 LEU64 VAL65 VAL66 ASN67 GLY68 LYS69 GLU70 ILE71 ILE72 VAL73 LYS74 ALA75 GLU76 ARG77 ASP78 PRO79 GLU80 ASN81 LEU82 ALA83 TRP84 GLY85 GLU86 ILE87 GLY88 VAL89 ASP90 ILE91 VAL92 VAL93 GLU94 SER95 THR96 GLY97 ARG98 PHE99 THR100 LYS101 ARG102 GLU103 ASP104 ALA105 ALA106 LYS107 HIS108 LEU109 GLU110 ALA111 GLY112 ALA113 LYS114 LYS115 VAL116 ILE117 ILE118 SER119 ALA120 PRO121 ALA122 LYS122A ASN123 GLU124 ASP125 ILE126 THR127 ILE128 VAL129 MET130 GLY131 VAL132 ASN133 GLN134 ASP135 LYS136 TYR137 ASP138 PRO138A LYS139 ALA140 HIS141 HIS142 VAL143 ILE144 SER145 ASN146 ALA147 SER148 CYS149 THR150 THR151 ASN152 CYS153 LEU154 ALA155 PRO156 PHE157 ALA158 LYS159 VAL160 LEU161 HIS162 GLU163 GLN164 PHE165 GLY166 ILE167 VAL168 ARG169 GLY170 MET171 MET172 THR173 THR174 VAL175 HIS176 SER177 TYR178 THR179 ASN180 ASP181 GLN182 ARG183 ILE184 LEU185 ASP186 LEU187 PRO188 HIS190 LYS191 ASP192 LEU193 ARG194 ARG195 ALA196 ARG197 ALA198 ALA199 ALA200 GLU201 SER202 ILE203 ILE204 PRO205 THR206 THR207 THR208 GLY209 ALA210 ALA211 LYS212 ALA213 VAL214 ALA215 LEU216 VAL217 LEU218 PRO219 GLU220 LEU221 LYS222 GLY223 LYS224 LEU225 ASN226 GLY227 MET228 ALA229 MET230 ARG231 VAL232 PRO233 THR234 PRO235 ASN236 VAL237 SER238 VAL239 VAL240 ASP241 LEU242 VAL243 ALA244 GLU245 LEU246 GLU247 LYS248 GLU249 VAL250 THR251 VAL252 GLU253 GLU254 VAL255 ASN256 ALA257 ALA258 LEU259 LYS260 ALA261 ALA262 ALA263 GLU264 GLY265 GLU266 LEU267 LYS268 GLY269 ILE270 LEU271 ALA272 TYR273 SER274 GLU275 GLU276 PRO277 LEU278 VAL279 SER280 ARG281 ASP282 TYR283 ASN284 GLY285 SER286 THR287 VAL288 SER289 SER290 THR291 ILE292 ASP293 ALA294 LEU295 SER296 THR297 MET298 VAL299 ILE300 ASP301 GLY302 LYS303 MET304 VAL305 LYS306 VAL307 VAL308 SER309 TRP310 TYR311 ASP312 ASN313 GLU314 THR315 GLY316 TYR317 SER318 HIS319 ARG320 VAL321 VAL322 ASP323 LEU324 ALA325 ALA326 TYR327 ILE328 ALA329 SER330 LYS331 GLY332 LEU333
Unit 2 ALA0 VAL1 LYS2 VAL3 GLY4 ILE5 ASN6 GLY7 PHE8 GLY9 ARG10 ILE11 GLY12 ARG13 ASN14 VAL15 PHE16 ARG17 ALA18 ALA19 LEU20 LYS21 ASN22 PRO23 ASP24 ILE25 GLU26 VAL27 VAL28 ALA29 VAL30 ASN31 ASP32 LEU33 THR34 ASP36 ALA37 ASN38 THR39 LEU40 ALA41 HIS42 LEU43 LEU44 LYS45 TYR46 ASP47 SER48 VAL49 HIS50 GLY51 ARG52 LEU53 ASP54 ALA55 GLU56 VAL57 SER58 VAL59 ASN60 GLY61 ASN62 ASN63 LEU64 VAL65 VAL66 ASN67 GLY68 LYS69 GLU70 ILE71 ILE72 VAL73 LYS74 ALA75 GLU76 ARG77 ASP78 PRO79 GLU80 ASN81 LEU82 ALA83 TRP84 GLY85 GLU86 ILE87 GLY88 VAL89 ASP90 ILE91 VAL92 VAL93 GLU94 SER95 THR96 GLY97 ARG98 PHE99 THR100 LYS101 ARG102 GLU103 ASP104 ALA105 ALA106 LYS107 HIS108 LEU109 GLU110 ALA111 GLY112 ALA113 LYS114 LYS115 VAL116 ILE117 ILE118 SER119 ALA120 PRO121 ALA122 LYS122A ASN123 GLU124 ASP125 ILE126 THR127 ILE128 VAL129 MET130 GLY131 VAL132 ASN133 GLN134 ASP135 LYS136 TYR137 ASP138 PRO138A LYS139 ALA140 HIS141 HIS142 VAL143 ILE144 SER145 ASN146 ALA147 SER148 CYS149 THR150 THR151 ASN152 CYS153 LEU154 ALA155 PRO156 PHE157 ALA158 LYS159 VAL160 LEU161 HIS162 GLU163 GLN164 PHE165 GLY166 ILE167 VAL168 ARG169 GLY170 MET171 MET172 THR173 THR174 VAL175 HIS176 SER177 TYR178 THR179 ASN180 ASP181 GLN182 ARG183 ILE184 LEU185 ASP186 LEU187 PRO188 HIS190 LYS191 ASP192 LEU193 ARG194 ARG195 ALA196 ARG197 ALA198 ALA199 ALA200 GLU201 SER202 ILE203 ILE204 PRO205 THR206 THR207 THR208 GLY209 ALA210 ALA211 LYS212 ALA213 VAL214 ALA215 LEU216 VAL217 LEU218 PRO219 GLU220 LEU221 LYS222 GLY223 LYS224 LEU225 ASN226 GLY227 MET228 ALA229 MET230 ARG231 VAL232 PRO233 THR234 PRO235 ASN236 VAL237 SER238 VAL239 VAL240 ASP241 LEU242 VAL243 ALA244 GLU245 LEU246 GLU247 LYS248 GLU249 VAL250 THR251 VAL252 GLU253 GLU254 VAL255 ASN256 ALA257 ALA258 LEU259 LYS260 ALA261 ALA262 ALA263 GLU264 GLY265 GLU266 LEU267 LYS268 GLY269 ILE270 LEU271 ALA272 TYR273 SER274 GLU275 GLU276 PRO277 LEU278 VAL279 SER280 ARG281 ASP282 TYR283 ASN284 GLY285 SER286 THR287 VAL288 SER289 SER290 THR291 ILE292 ASP293 ALA294 LEU295 SER296 THR297 MET298 VAL299 ILE300 ASP301 GLY302 LYS303 MET304 VAL305 LYS306 VAL307 VAL308 SER309 TRP310 TYR311 ASP312 ASN313 GLU314 THR315 GLY316 TYR317 SER318 HIS319 ARG320 VAL321 VAL322 ASP323 LEU324 ALA325 ALA326 TYR327 ILE328 ALA329 SER330 LYS331 GLY332 LEU333
Unit 3 ALA0 VAL1 LYS2 VAL3 GLY4 ILE5 ASN6 GLY7 PHE8 GLY9 ARG10 ILE11 GLY12 ARG13 ASN14 VAL15 PHE16 ARG17 ALA18 ALA19 LEU20 LYS21 ASN22 PRO23 ASP24 ILE25 GLU26 VAL27 VAL28 ALA29 VAL30 ASN31 ASP32 LEU33 THR34 ASP36 ALA37 ASN38 THR39 LEU40 ALA41 HIS42 LEU43 LEU44 LYS45 TYR46 ASP47 SER48 VAL49 HIS50 GLY51 ARG52 LEU53 ASP54 ALA55 GLU56 VAL57 SER58 VAL59 ASN60 GLY61 ASN62 ASN63 LEU64 VAL65 VAL66 ASN67 GLY68 LYS69 GLU70 ILE71 ILE72 VAL73 LYS74 ALA75 GLU76 ARG77 ASP78 PRO79 GLU80 ASN81 LEU82 ALA83 TRP84 GLY85 GLU86 ILE87 GLY88 VAL89 ASP90 ILE91 VAL92 VAL93 GLU94 SER95 THR96 GLY97 ARG98 PHE99 THR100 LYS101 ARG102 GLU103 ASP104 ALA105 ALA106 LYS107 HIS108 LEU109 GLU110 ALA111 GLY112 ALA113 LYS114 LYS115 VAL116 ILE117 ILE118 SER119 ALA120 PRO121 ALA122 LYS122A ASN123 GLU124 ASP125 ILE126 THR127 ILE128 VAL129 MET130 GLY131 VAL132 ASN133 GLN134 ASP135 LYS136 TYR137 ASP138 PRO138A LYS139 ALA140 HIS141 HIS142 VAL143 ILE144 SER145 ASN146 ALA147 SER148 CYS149 THR150 THR151 ASN152 CYS153 LEU154 ALA155 PRO156 PHE157 ALA158 LYS159 VAL160 LEU161 HIS162 GLU163 GLN164 PHE165 GLY166 ILE167 VAL168 ARG169 GLY170 MET171 MET172 THR173 THR174 VAL175 HIS176 SER177 TYR178 THR179 ASN180 ASP181 GLN182 ARG183 ILE184 LEU185 ASP186 LEU187 PRO188 HIS190 LYS191 ASP192 LEU193 ARG194 ARG195 ALA196 ARG197 ALA198 ALA199 ALA200 GLU201 SER202 ILE203 ILE204 PRO205 THR206 THR207 THR208 GLY209 ALA210 ALA211 LYS212 ALA213 VAL214 ALA215 LEU216 VAL217 LEU218 PRO219 GLU220 LEU221 LYS222 GLY223 LYS224 LEU225 ASN226 GLY227 MET228 ALA229 MET230 ARG231 VAL232 PRO233 THR234 PRO235 ASN236 VAL237 SER238 VAL239 VAL240 ASP241 LEU242 VAL243 ALA244 GLU245 LEU246 GLU247 LYS248 GLU249 VAL250 THR251 VAL252 GLU253 GLU254 VAL255 ASN256 ALA257 ALA258 LEU259 LYS260 ALA261 ALA262 ALA263 GLU264 GLY265 GLU266 LEU267 LYS268 GLY269 ILE270 LEU271 ALA272 TYR273 SER274 GLU275 GLU276 PRO277 LEU278 VAL279 SER280 ARG281 ASP282 TYR283 ASN284 GLY285 SER286 THR287 VAL288 SER289 SER290 THR291 ILE292 ASP293 ALA294 LEU295 SER296 THR297 MET298 VAL299 ILE300 ASP301 GLY302 LYS303 MET304 VAL305 LYS306 VAL307 VAL308 SER309 TRP310 TYR311 ASP312 ASN313 GLU314 THR315 GLY316 TYR317 SER318 HIS319 ARG320 VAL321 VAL322 ASP323 LEU324 ALA325 ALA326 TYR327 ILE328 ALA329 SER330 LYS331 GLY332 LEU333
Unit 4 ALA0 VAL1 LYS2 VAL3 GLY4 ILE5 ASN6 GLY7 PHE8 GLY9 ARG10 ILE11 GLY12 ARG13 ASN14 VAL15 PHE16 ARG17 ALA18 ALA19 LEU20 LYS21 ASN22 PRO23 ASP24 ILE25 GLU26 VAL27 VAL28 ALA29 VAL30 ASN31 ASP32 LEU33 THR34 ASP36 ALA37 ASN38 THR39 LEU40 ALA41 HIS42 LEU43 LEU44 LYS45 TYR46 ASP47 SER48 VAL49 HIS50 GLY51 ARG52 LEU53 ASP54 ALA55 GLU56 VAL57 SER58 VAL59 ASN60 GLY61 ASN62 ASN63 LEU64 VAL65 VAL66 ASN67 GLY68 LYS69 GLU70 ILE71 ILE72 VAL73 LYS74 ALA75 GLU76 ARG77 ASP78 PRO79 GLU80 ASN81 LEU82 ALA83 TRP84 GLY85 GLU86 ILE87 GLY88 VAL89 ASP90 ILE91 VAL92 VAL93 GLU94 SER95 THR96 GLY97 ARG98 PHE99 THR100 LYS101 ARG102 GLU103 ASP104 ALA105 ALA106 LYS107 HIS108 LEU109 GLU110 ALA111 GLY112 ALA113 LYS114 LYS115 VAL116 ILE117 ILE118 SER119 ALA120 PRO121 ALA122 LYS122A ASN123 GLU124 ASP125 ILE126 THR127 ILE128 VAL129 MET130 GLY131 VAL132 ASN133 GLN134 ASP135 LYS136 TYR137 ASP138 PRO138A LYS139 ALA140 HIS141 HIS142 VAL143 ILE144 SER145 ASN146 ALA147 SER148 CYS149 THR150 THR151 ASN152 CYS153 LEU154 ALA155 PRO156 PHE157 ALA158 LYS159 VAL160 LEU161 HIS162 GLU163 GLN164 PHE165 GLY166 ILE167 VAL168 ARG169 GLY170 MET171 MET172 THR173 THR174 VAL175 HIS176 SER177 TYR178 THR179 ASN180 ASP181 GLN182 ARG183 ILE184 LEU185 ASP186 LEU187 PRO188 HIS190 LYS191 ASP192 LEU193 ARG194 ARG195 ALA196 ARG197 ALA198 ALA199 ALA200 GLU201 SER202 ILE203 ILE204 PRO205 THR206 THR207 THR208 GLY209 ALA210 ALA211 LYS212 ALA213 VAL214 ALA215 LEU216 VAL217 LEU218 PRO219 GLU220 LEU221 LYS222 GLY223 LYS224 LEU225 ASN226 GLY227 MET228 ALA229 MET230 ARG231 VAL232 PRO233 THR234 PRO235 ASN236 VAL237 SER238 VAL239 VAL240 ASP241 LEU242 VAL243 ALA244 GLU245 LEU246 GLU247 LYS248 GLU249 VAL250 THR251 VAL252 GLU253 GLU254 VAL255 ASN256 ALA257 ALA258 LEU259 LYS260 ALA261 ALA262 ALA263 GLU264 GLY265 GLU266 LEU267 LYS268 GLY269 ILE270 LEU271 ALA272 TYR273 SER274 GLU275 GLU276 PRO277 LEU278 VAL279 SER280 ARG281 ASP282 TYR283 ASN284 GLY285 SER286 THR287 VAL288 SER289 SER290 THR291 ILE292 ASP293 ALA294 LEU295 SER296 THR297 MET298 VAL299 ILE300 ASP301 GLY302 LYS303 MET304 VAL305 LYS306 VAL307 VAL308 SER309 TRP310 TYR311 ASP312 ASN313 GLU314 THR315 GLY316 TYR317 SER318 HIS319 ARG320 VAL321 VAL322 ASP323 LEU324 ALA325 ALA326 TYR327 ILE328 ALA329 SER330 LYS331 GLY332 LEU333
Ligands
Unit 5 SO4338 SO4339
Unit 6 SO4338 SO4339
Unit 7 SO4338 SO4339
Unit 8 SO4338 SO4339
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany