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(-) Description

Title :  THIOACYLENZYME INTERMEDIATE OF BACILLUS STEAROTHERMOPHILUS PHOSPHORYLATING GAPDH
 
Authors :  S. Moniot, C. Vonrhein, G. Bricogne, C. Didierjean, C. Corbier
Date :  21 Mar 08  (Deposition) - 17 Jun 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.77
Chains :  Asym./Biol. Unit :  O,P,Q,R
Keywords :  Microspectrophotometry, Reaction Intermediate, Dehydrogenase, Phosphate Binding Site, Thioacylenzyme, Glycolysis, Nad, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Moniot, S. Bruno, C. Vonrhein, C. Didierjean, S. Boschi-Muller, M. Vas, G. Bricogne, G. Branlant, A. Mozzarelli, C. Corbier
Trapping Of The Thioacylglyceraldehyde-3-Phosphate Dehydrogenase Intermediate From Bacillus Stearothermophilus Direct Evidence For A Flip-Flop Mechanism
J. Biol. Chem. V. 283 21693 2008
PubMed-ID: 18480053  |  Reference-DOI: 10.1074/JBC.M802286200

(-) Compounds

Molecule 1 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
    Chains: O, P, Q, R
    EC Number: 1.2.1.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBLUESCRIPT II SK
    Expression System Strain: HB101
    Expression System Vector Type: PLASMID
    Gene: GAP
    Organism Scientific: BACILLUS STEAROTHERMOPHILUS
    Synonym: GAPDH

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : OPQR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 35)

Asymmetric/Biological Unit (5, 35)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2G3H4Ligand/IonGLYCERALDEHYDE-3-PHOSPHATE
3GOL8Ligand/IonGLYCEROL
4NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
5SO418Ligand/IonSULFATE ION

(-) Sites  (35, 35)

Asymmetric Unit (35, 35)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER O:148 , THR O:207 , THR O:208 , GLY O:209 , ALA O:210BINDING SITE FOR RESIDUE SO4 O 401
02AC2SOFTWAREPRO P:121 , SER P:148 , THR P:207 , THR P:208 , GLY P:209 , ALA P:210BINDING SITE FOR RESIDUE SO4 P 401
03AC3SOFTWAREPRO Q:121 , SER Q:148 , THR Q:207 , THR Q:208 , GLY Q:209 , ALA Q:210BINDING SITE FOR RESIDUE SO4 Q 401
04AC4SOFTWARESER R:148 , THR R:207 , THR R:208 , GLY R:209 , ALA R:210BINDING SITE FOR RESIDUE SO4 R 401
05AC5SOFTWARETHR O:179 , ASP O:181 , ARG O:195 , ARG O:231BINDING SITE FOR RESIDUE SO4 O 402
06AC6SOFTWARETHR P:179 , ASP P:181 , ARG P:195 , ARG P:231BINDING SITE FOR RESIDUE SO4 P 402
07AC7SOFTWARETHR Q:179 , ASP Q:181 , ARG Q:195 , ARG Q:231BINDING SITE FOR RESIDUE SO4 Q 402
08AC8SOFTWARETHR R:179 , ASP R:181 , ARG R:195 , ARG R:231BINDING SITE FOR RESIDUE SO4 R 402
09AC9SOFTWAREARG O:169 , LYS P:303BINDING SITE FOR RESIDUE SO4 O 403
10BC1SOFTWAREARG O:183 , HIS O:190 , LYS O:191BINDING SITE FOR RESIDUE SO4 O 404
11BC2SOFTWARELYS Q:303 , ARG R:169BINDING SITE FOR RESIDUE SO4 R 403
12BC3SOFTWAREARG Q:183 , PRO Q:188 , HIS Q:190 , LYS Q:191BINDING SITE FOR RESIDUE SO4 Q 403
13BC4SOFTWAREARG R:52BINDING SITE FOR RESIDUE SO4 R 404
14BC5SOFTWARESER R:58BINDING SITE FOR RESIDUE SO4 R 405
15BC6SOFTWAREASN O:62 , ASN O:63BINDING SITE FOR RESIDUE SO4 O 405
16BC7SOFTWAREARG R:183 , HIS R:190 , LYS R:191BINDING SITE FOR RESIDUE SO4 R 406
17BC8SOFTWAREASP P:138 , LYS P:139 , LEU R:109 , GLY R:112 , ALA R:113 , LYS R:114BINDING SITE FOR RESIDUE SO4 R 407
18BC9SOFTWAREGLY O:85 , ALA O:111 , GLY O:112BINDING SITE FOR RESIDUE SO4 O 406
19CC1SOFTWARESER O:148 , CYS O:149 , THR O:150 , HIS O:176 , THR O:179 , THR O:208 , GLY O:209 , ARG O:231BINDING SITE FOR RESIDUE G3H O 400
20CC2SOFTWARESER P:148 , CYS P:149 , THR P:150 , HIS P:176 , THR P:208 , GLY P:209 , ARG P:231BINDING SITE FOR RESIDUE G3H P 400
21CC3SOFTWARESER Q:148 , CYS Q:149 , THR Q:150 , HIS Q:176 , THR Q:179 , THR Q:208 , GLY Q:209 , ARG Q:231BINDING SITE FOR RESIDUE G3H Q 400
22CC4SOFTWARESER R:148 , CYS R:149 , THR R:150 , HIS R:176 , THR R:179 , THR R:208 , GLY R:209 , ARG R:231BINDING SITE FOR RESIDUE G3H R 400
23CC5SOFTWAREGLY O:7 , GLY O:9 , ARG O:10 , ILE O:11 , ASN O:31 , ASP O:32 , LEU O:33 , ARG O:77 , SER O:95 , THR O:96 , GLY O:97 , ARG O:98 , PHE O:99 , SER O:119 , ALA O:120 , ASN O:180 , ASN O:313 , TYR O:317 , LEU R:187BINDING SITE FOR RESIDUE NAD O 407
24CC6SOFTWAREGLY P:7 , GLY P:9 , ARG P:10 , ILE P:11 , ASN P:31 , ASP P:32 , LEU P:33 , ARG P:77 , SER P:95 , THR P:96 , GLY P:97 , SER P:119 , ALA P:120 , ASN P:180 , ASN P:313 , TYR P:317BINDING SITE FOR RESIDUE NAD P 403
25CC7SOFTWAREGLY Q:7 , GLY Q:9 , ARG Q:10 , ILE Q:11 , ASN Q:31 , ASP Q:32 , LEU Q:33 , ARG Q:77 , SER Q:95 , THR Q:96 , GLY Q:97 , ARG Q:98 , PHE Q:99 , SER Q:119 , ALA Q:120 , ASN Q:180 , ASN Q:313 , TYR Q:317BINDING SITE FOR RESIDUE NAD Q 404
26CC8SOFTWAREGLY R:7 , GLY R:9 , ARG R:10 , ILE R:11 , ASN R:31 , ASP R:32 , LEU R:33 , ARG R:77 , SER R:95 , THR R:96 , GLY R:97 , ARG R:98 , PHE R:99 , SER R:119 , ALA R:120 , ASN R:180 , ASN R:313 , TYR R:317BINDING SITE FOR RESIDUE NAD R 408
27CC9SOFTWAREGLN Q:134 , ASP Q:135 , LYS Q:159BINDING SITE FOR RESIDUE EDO Q 405
28DC1SOFTWAREARG Q:169 , LYS R:303BINDING SITE FOR RESIDUE GOL R 409
29DC2SOFTWAREGLY P:131 , GLN P:134 , ASP P:135 , LYS P:159BINDING SITE FOR RESIDUE GOL P 404
30DC3SOFTWAREASP P:181 , ARG P:183 , PRO P:188 , HIS P:190 , LYS P:191BINDING SITE FOR RESIDUE GOL P 405
31DC4SOFTWARELYS O:303 , ARG P:169BINDING SITE FOR RESIDUE GOL O 408
32DC5SOFTWAREGLN R:134 , ASP R:135BINDING SITE FOR RESIDUE GOL R 410
33DC6SOFTWARELYS P:212 , ALA P:215 , GLY P:223BINDING SITE FOR RESIDUE GOL P 406
34DC7SOFTWAREASN Q:14 , ARG Q:17 , HIS Q:50 , THR Q:315BINDING SITE FOR RESIDUE GOL Q 406
35DC8SOFTWAREHIS P:50 , GLY P:51 , ARG R:281BINDING SITE FOR RESIDUE GOL P 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CMC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3CMC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CMC)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3P_GEOSE150-157
 
 
 		  4O:147-154
P:147-154
Q:147-154
R:147-154

(-) Exons   (0, 0)

(no "Exon" information available for 3CMC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain O from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d3cmco1 O:0-148,O:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d3cmco2 O:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d3cmco1               SCOP domains
               CATH domains 3cmcO01 O:0-147,O:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        3cmcO02 O:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            3cmcO01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhh....eeeeeee...hhhhhhhhhhee...ee....eeee..eeee..eeeeee...hhhhh.hhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee.........................eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cmc O    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190                                                                                                                                               


Chain P from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d3cmcp1 P:0-148,P:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d3cmcp2 P:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d3cmcp1               SCOP domains
               CATH domains 3cmcP01 P:0-147,P:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        3cmcP02 P:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            3cmcP01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhh....eeeeeee...hhhhhhhhhhee...ee....eeee..eeee..eeeeee...hhhhh.hhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee.........................eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cmc P    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190                                                                                                                                               


Chain Q from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d3cmcq1 Q:0-148,Q:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d3cmcq2 Q:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d3cmcq1               SCOP domains
               CATH domains 3cmcQ01 Q:0-147,Q:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        3cmcQ02 Q:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            3cmcQ01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhee...ee....eeee..eeee..eeeeee...hhhhh.hhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee.........................eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cmc Q    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190                                                                                                                                               


Chain R from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d3cmcr1 R:0-148,R:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d3cmcr2 R:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d3cmcr1               SCOP domains
               CATH domains 3cmcR01 R:0-147,R:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        3cmcR02 R:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            3cmcR01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhee...ee....eeee..eeee..eeeeee...hhhhh.hhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee.........................eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cmc R    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CMC)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain O,P,Q,R   (G3P_GEOSE | P00362)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0004365    glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity    Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
    GO:0006006    glucose metabolic process    The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G3P_GEOSE | P00362: 1dbv 1gd1 1npt 1nq5 1nqa 1nqo 2dbv 2gd1 3dbv 4dbv

(-) Related Entries Specified in the PDB File

1gd1 HOLOENZYME STRUCTURE
1npt HOLOENZYME STRUCTURE (C149A MUTANT)
1nq5 HOLOENZYME STRUCTURE (C149S MUTANT)
1nqa MICHAELIS COMPLEX STRUCTURE WITH SUBSTRATE (C149A MUTANT)
1nqo MICHAELIS COMPLEX STRUCTURE WITH SUBSTRATE (C149S MUTANT)
2gd1 APOENZYME STRUCTURE