1NQO - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH CYS 149 REPLACED BY SER COMPLEXED WITH NAD+ AND D-GLYCERALDEHYDE-3-PHOSPHATE

Authors :   C. Didierjean, C. Corbier, M. Fatih, F. Favier, S. Boschi-Muller, G. Br A. Aubry

Date :   22 Jan 03 (Deposition) - 22 Apr 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.01

Chains :   Asym. Unit : A,C,O,Q
Biol. Unit 1: O,Q  (2x)
Biol. Unit 2: A,C  (1x)
Biol. Unit 3: A,C  (2x)

Keywords :   Glycolysis, Oxidoreductase, Nad (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Didierjean, C. Corbier, M. Fatih, F. Favier, S. Boschi-Muller, G. Branlant, A. Aubry
Crystal Structure Of Two Ternary Complexes Of Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Stearothermophilus With Nad And D-Glyceraldehyde-3-Phosphate
J. Biol. Chem. V. 278 12968 2003
PubMed-ID: 12569100 | Reference-DOI: 10.1074/JBC.M211040200

Molecule 1 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE
	Chains	:	O, Q, A, C
	EC Number	:	1.2.1.12
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PBLUESCRIPTII
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	GAP
	Mutation	:	YES
	Organism Scientific	:	GEOBACILLUS STEAROTHERMOPHILUS
	Organism Taxid	:	1422
	Synonym	:	GAPDH

		1	2	3	4
Asymmetric Unit	:	A	C	O	Q
Biological Unit 1 (2x)	:			O	Q
Biological Unit 2 (1x)	:	A	C
Biological Unit 3 (2x)	:	A	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	G3H	4	Ligand/Ion	GLYCERALDEHYDE-3-PHOSPHATE
2	NAD	4	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	G3H	4	Ligand/Ion	GLYCERALDEHYDE-3-PHOSPHATE
2	NAD	4	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	G3H	2	Ligand/Ion	GLYCERALDEHYDE-3-PHOSPHATE
2	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Biological Unit 3 (2, 8)

No.	Name	Count	Type	Full Name
1	G3H	4	Ligand/Ion	GLYCERALDEHYDE-3-PHOSPHATE
2	NAD	4	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY O:7 , PHE O:8 , GLY O:9 , ARG O:10 , ILE O:11 , ASN O:31 , ASP O:32 , GLU O:76 , ARG O:77 , SER O:95 , THR O:96 , GLY O:97 , SER O:119 , ALA O:120 , ASN O:180 , ASN O:313 , TYR O:317 , G3H O:1337 , HOH O:1341 , HOH O:1353 , HOH O:1360 , HOH O:1364 , HOH O:1366 , HOH O:1369 , HOH O:1394 , HOH O:1468 , HOH O:1477 , HOH O:1479 , HOH O:1499 , HOH O:1621 , LEU Q:187 , HOH Q:3437 , HOH Q:3513	BINDING SITE FOR RESIDUE NAD O 1336
2	AC2	SOFTWARE	SER O:148 , SER O:149 , THR O:150 , HIS O:176 , THR O:179 , ARG O:195 , ARG O:231 , NAD O:1336 , HOH O:1353 , HOH O:1621	BINDING SITE FOR RESIDUE G3H O 1337
3	AC3	SOFTWARE	LEU O:187 , HOH O:1402 , HOH O:1486 , GLY Q:7 , GLY Q:9 , ARG Q:10 , ILE Q:11 , ASN Q:31 , ASP Q:32 , LEU Q:33 , GLU Q:76 , ARG Q:77 , SER Q:95 , THR Q:96 , GLY Q:97 , PHE Q:99 , SER Q:119 , ALA Q:120 , ASN Q:180 , ASN Q:313 , TYR Q:317 , HOH Q:1495 , HOH Q:1497 , G3H Q:3337 , HOH Q:3342 , HOH Q:3353 , HOH Q:3377 , HOH Q:3389 , HOH Q:3390 , HOH Q:3430 , HOH Q:3489 , HOH Q:3502	BINDING SITE FOR RESIDUE NAD Q 3336
4	AC4	SOFTWARE	SER Q:149 , THR Q:150 , HIS Q:176 , THR Q:179 , ARG Q:195 , ARG Q:231 , NAD Q:3336 , HOH Q:3353 , HOH Q:3421 , HOH Q:3621	BINDING SITE FOR RESIDUE G3H Q 3337
5	AC5	SOFTWARE	GLY A:7 , PHE A:8 , GLY A:9 , ARG A:10 , ILE A:11 , ASN A:31 , ASP A:32 , LEU A:33 , GLU A:76 , ARG A:77 , SER A:95 , THR A:96 , GLY A:97 , PHE A:99 , SER A:119 , ALA A:120 , ASN A:180 , LEU A:187 , ASN A:313 , TYR A:317 , G3H A:5337 , HOH A:5341 , HOH A:5353 , HOH A:5369 , HOH A:5377 , HOH A:5411 , HOH A:5475 , HOH A:5487 , HOH A:5492 , HOH A:5510 , HOH A:5621	BINDING SITE FOR RESIDUE NAD A 5336
6	AC6	SOFTWARE	SER A:149 , THR A:150 , HIS A:176 , THR A:179 , ASP A:181 , ARG A:195 , ARG A:231 , NAD A:5336 , HOH A:5353 , HOH A:5405 , HOH A:5621	BINDING SITE FOR RESIDUE G3H A 5337
7	AC7	SOFTWARE	GLY C:7 , GLY C:9 , ARG C:10 , ILE C:11 , ASN C:31 , ASP C:32 , LEU C:33 , GLU C:76 , ARG C:77 , SER C:95 , THR C:96 , GLY C:97 , SER C:119 , ALA C:120 , ASN C:180 , LEU C:187 , ASN C:313 , TYR C:317 , G3H C:7337 , HOH C:7342 , HOH C:7353 , HOH C:7366 , HOH C:7373 , HOH C:7374 , HOH C:7405 , HOH C:7412 , HOH C:7474 , HOH C:7482 , HOH C:7491 , HOH C:7499 , HOH C:7501	BINDING SITE FOR RESIDUE NAD C 7336
8	AC8	SOFTWARE	SER C:149 , THR C:150 , HIS C:176 , THR C:179 , ASP C:181 , ARG C:231 , NAD C:7336 , HOH C:7353 , HOH C:7621	BINDING SITE FOR RESIDUE G3H C 7337

(no "SS Bond" information available for 1NQO)

(no "Cis Peptide Bond" information available for 1NQO)

(no "SAP(SNP)/Variant" information available for 1NQO)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GAPDH	PS00071	Glyceraldehyde 3-phosphate dehydrogenase active site.	G3P_GEOSE	150-157	4	A:147-154 C:147-154 O:147-154 Q:147-154

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GAPDH	PS00071	Glyceraldehyde 3-phosphate dehydrogenase active site.	G3P_GEOSE	150-157	4	- - O:147-154 Q:147-154

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GAPDH	PS00071	Glyceraldehyde 3-phosphate dehydrogenase active site.	G3P_GEOSE	150-157	2	A:147-154 C:147-154 - -

Biological Unit 3 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GAPDH	PS00071	Glyceraldehyde 3-phosphate dehydrogenase active site.	G3P_GEOSE	150-157	4	A:147-154 C:147-154 - -

(no "Exon" information available for 1NQO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d1nqoa1 A:0-148,A:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d1nqoa2 A:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d1nqoa1               SCOP domains
               CATH domains 1nqoA01 A:0-147,A:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        1nqoA02 A:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            1nqoA01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhh....eeeeeee...hhhhhhhhhhee...ee....eeee..eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee.........................eeee.....hhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1nqo A    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190

Chain C from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d1nqoc1 C:0-148,C:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d1nqoc2 C:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d1nqoc1               SCOP domains
               CATH domains 1nqoC01 C:0-147,C:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        1nqoC02 C:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            1nqoC01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhh....eeeeeee...hhhhhhhhhhee...ee....eeee..eeee..eeeeee...hhhhh.hhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee.........................eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1nqo C    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190

Chain O from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d1nqoo1 O:0-148,O:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d1nqoo2 O:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d1nqoo1               SCOP domains
               CATH domains 1nqoO01 O:0-147,O:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        1nqoO02 O:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            1nqoO01              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhh....eeeeeee...hhhhhhhhhhee...ee....eeee..eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee.........................eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1nqo O    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190

Chain Q from PDB  Type:PROTEIN  Length:334
 aligned with G3P_GEOSE | P00362 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    
           G3P_GEOSE      2 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  335
               SCOP domains d1nqoq1 Q:0-148,Q:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                            d1nqoq2 Q:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                 d1nqoq1               SCOP domains
               CATH domains 1nqoQ01 Q:0-147,Q:314-333 NAD(P)-binding Rossmann-like Domain                                                                                        1nqoQ02 Q:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            1nqoQ01              CATH domains
           Pfam domains (1) -Gp_dh_N-1nqoQ05 Q:1-149                                                                                                                               ----Gp_dh_C-1nqoQ01 Q:154-311                                                                                                                                    ---------------------- Pfam domains (1)
           Pfam domains (2) -Gp_dh_N-1nqoQ06 Q:1-149                                                                                                                               ----Gp_dh_C-1nqoQ02 Q:154-311                                                                                                                                    ---------------------- Pfam domains (2)
           Pfam domains (3) -Gp_dh_N-1nqoQ07 Q:1-149                                                                                                                               ----Gp_dh_C-1nqoQ03 Q:154-311                                                                                                                                    ---------------------- Pfam domains (3)
           Pfam domains (4) -Gp_dh_N-1nqoQ08 Q:1-149                                                                                                                               ----Gp_dh_C-1nqoQ04 Q:154-311                                                                                                                                    ---------------------- Pfam domains (4)
         Sec.struct. author .eeeeee..hhhhhhhhhhhh....eeeeeee...hhhhhhhhhhee...ee....eeee..eeee..eeeeee...hhhhh.hhhhh..eeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee.........................eeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1nqo Q    0 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL  333
                                     9        19        29    ||  40        50        60        70        80        90       100       110       120  |    129      138A       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329    
                                                             34|                                                                                   122A             138A                                               188|                                                                                                                                               
                                                              36                                                                                                                                                        190

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Dihydrodipicolinate Reductase; domain 2 (182)

Homologous Superfamily: Dihydrodipicolinate Reductase; domain 2 (178)

Geobacillus stearothermophilus. Organism_taxid: 1422. (8)

1a	1nqoA02	A:148-313
1b	1nqoC02	C:148-313
1c	1nqoO02	O:148-313
1d	1nqoQ02	Q:148-313

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Geobacillus stearothermophilus. Organism_taxid: 1422. (10)

2a	1nqoA01	A:0-147,A:314-333
2b	1nqoC01	C:0-147,C:314-333
2c	1nqoO01	O:0-147,O:314-333
2d	1nqoQ01	Q:0-147,Q:314-333

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: GADPH_aa-bio_dh (59)

Family: Gp_dh_C (38)

Geobacillus stearothermophilus (Bacillus stearothermophilus) (4)

1a	Gp_dh_C-1nqoQ01	Q:154-311
1b	Gp_dh_C-1nqoQ02	Q:154-311
1c	Gp_dh_C-1nqoQ03	Q:154-311
1d	Gp_dh_C-1nqoQ04	Q:154-311

Clan: NADP_Rossmann (1239)

Family: Gp_dh_N (38)

Geobacillus stearothermophilus (Bacillus stearothermophilus) (4)

2a	Gp_dh_N-1nqoQ05	Q:1-149
2b	Gp_dh_N-1nqoQ06	Q:1-149
2c	Gp_dh_N-1nqoQ07	Q:1-149
2d	Gp_dh_N-1nqoQ08	Q:1-149

Asymmetric Unit(hide GO term definitions)

Chain A,C,O,Q (G3P_GEOSE | P00362)

molecular function
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0004365	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
	GO:0006006	glucose metabolic process	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	1nqo
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	1.2.1.12
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UniProtKB/Swiss-Prot
	G3P_GEOSE \| P00362	:	1dbv 1gd1 1npt 1nq5 1nqa 2dbv 2gd1 3cmc 3dbv 4dbv

1npt	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH CYS 149 REPLACED BY ALA COMPLEXED WITH NAD+
1nq5	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH CYS 149 REPLACED BY SER COMPLEXED WITH NAD+
1nqa	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH CYS 149 REPLACED BY ALA COMPLEXED WITH NAD+ AND D- GLYCERALDEHYDE-3-PHOSPHATE

Description

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Chains, Units

Ligands, Modified Residues, Ions (2, 8)

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