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(-) Description

Title :  KSHV LANA (ORF73) C-TERMINAL DOMAIN, DECAMERIC RING: MONOCLINIC CRYSTAL FORM
 
Authors :  J. Hellert, J. Krausze, T. Luhrs
Date :  02 Nov 12  (Deposition) - 13 Nov 13  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  G,H  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A,B  (1x)
Biol. Unit 4:  E,F  (1x)
Biol. Unit 5:  I,J  (1x)
Keywords :  Viral Protein, Viral Protein N, Latency-Associated Nuclear Antigen, Lana-1, Dna-Binding Domain, Origin-Binding Domain, Oligomerization Domain, Kaposi'S Sarcoma-Associated Herpesvirus, Gammaherpesvirus, Rhadinovirus, Primary Effusion Lymphoma, Multicentric Castleman'S Disease, Tumor Virus, Cancer, Murid Herpesvirus 4, Muhv-4, Murid Herpesvirus 68, Mhv-68 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hellert, M. Weidner-Glunde, J. Krausze, U. Richter, H. Adler, R. Fedorov, M. Pietrek, J. Ruckert, C. Ritter, T. F. Schulz, T. Luhrs
A Structural Basis For Brd2/4-Mediated Host Chromatin Interaction And Oligomer Assembly Of Kaposi Sarcoma-Associated Herpesvirus And Murine Gammaherpesvirus Lana Proteins.
Plos Pathog. V. 9 3640 2013
PubMed-ID: 24146614  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1003640

(-) Compounds

Molecule 1 - ORF 73
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET BASED
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN, RESIDUES 1013-1149
    Organism Scientific: HUMAN HERPESVIRUS 8 TYPE M
    Organism Taxid: 435895
    Synonym: KSHV LANA

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x):       GH  
Biological Unit 2 (1x):   CD      
Biological Unit 3 (1x): AB        
Biological Unit 4 (1x):     EF    
Biological Unit 5 (1x):         IJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 24)

Asymmetric Unit (1, 24)
No.NameCountTypeFull Name
1CL24Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:1140 , LYS A:1141 , GLN B:1116 , SER B:1135 , ILE B:1136BINDING SITE FOR RESIDUE CL A 2148
02AC2SOFTWAREARG A:1119 , ALA A:1129 , GLY A:1130BINDING SITE FOR RESIDUE CL A 2149
03AC3SOFTWAREGLN A:1116 , SER A:1135 , ILE A:1136 , LYS B:1140 , LYS B:1141BINDING SITE FOR RESIDUE CL B 2151
04AC4SOFTWAREARG B:1119 , ALA B:1129 , GLY B:1130 , HOH B:2003BINDING SITE FOR RESIDUE CL B 2152
05AC5SOFTWAREARG B:1039BINDING SITE FOR RESIDUE CL B 2153
06AC6SOFTWAREGLY J:1067 , LYS J:1070BINDING SITE FOR RESIDUE CL B 2154
07AC7SOFTWAREGLN C:1116 , ILE C:1136 , LYS D:1141BINDING SITE FOR RESIDUE CL C 2149
08AC8SOFTWAREGLY C:1067 , ARG C:1119BINDING SITE FOR RESIDUE CL C 2150
09AC9SOFTWARELYS C:1141 , GLN D:1116 , SER D:1135 , ILE D:1136BINDING SITE FOR RESIDUE CL D 2149
10BC1SOFTWAREHIS E:1126BINDING SITE FOR RESIDUE CL D 2150
11BC2SOFTWAREARG D:1119 , ALA D:1129 , HOH D:2003BINDING SITE FOR RESIDUE CL D 2151
12BC3SOFTWAREGLN D:1034 , LYS D:1070 , HOH D:2002BINDING SITE FOR RESIDUE CL D 2152
13BC4SOFTWAREGLN E:1116 , SER E:1135 , ILE E:1136 , LYS F:1141BINDING SITE FOR RESIDUE CL E 2150
14BC5SOFTWAREARG E:1119 , ALA E:1129 , GLY E:1130 , CL E:2152BINDING SITE FOR RESIDUE CL E 2151
15BC6SOFTWARELYS E:1070 , TRP E:1122 , CL E:2151BINDING SITE FOR RESIDUE CL E 2152
16BC7SOFTWARELYS E:1140 , LYS E:1141 , GLN F:1116 , SER F:1135 , ILE F:1136BINDING SITE FOR RESIDUE CL F 2148
17BC8SOFTWAREGLY F:1067 , ARG F:1119BINDING SITE FOR RESIDUE CL F 2149
18BC9SOFTWAREGLN G:1116 , ILE G:1136 , LYS H:1140 , LYS H:1141BINDING SITE FOR RESIDUE CL G 2147
19CC1SOFTWAREARG G:1119 , ALA G:1129 , GLY G:1130BINDING SITE FOR RESIDUE CL G 2148
20CC2SOFTWARELYS G:1140 , GLN H:1116 , SER H:1135 , ILE H:1136BINDING SITE FOR RESIDUE CL H 2148
21CC3SOFTWAREGLN I:1116 , ILE I:1136 , LYS J:1141BINDING SITE FOR RESIDUE CL I 2148
22CC4SOFTWARELEU D:1128 , GLN I:1034 , LYS I:1070BINDING SITE FOR RESIDUE CL I 2150
23CC5SOFTWARELYS I:1141 , GLN J:1116 , SER J:1135 , ILE J:1136BINDING SITE FOR RESIDUE CL J 2148

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YPY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2YPY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YPY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YPY)

(-) Exons   (0, 0)

(no "Exon" information available for 2YPY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
 aligned with Q76SB0_HHV8 | Q76SB0 from UniProtKB/TrEMBL  Length:1162

    Alignment length:134
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143    
         Q76SB0_HHV8   1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQ 1147
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.....hhhhhhhhhhhhhhh.........eeeeeee..hhhhhhhhhh......ee...ee............eeeeeee..hhhhhhhhhhhhhhhhh.......eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2ypy A 1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQ 1147
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143    


Chain B from PDB  Type:PROTEIN  Length:136
 aligned with Q76SB0_HHV8 | Q76SB0 from UniProtKB/TrEMBL  Length:1162

    Alignment length:136
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      
         Q76SB0_HHV8   1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQPG 1149
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.....hhhhhhhhhhhhhhh.........eeeeeee..hhhhhhhhhh......ee...eee..........eeeeeeee..hhhhhhhhhhhhhhhhh.......eeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2ypy B 1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQPG 1149
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      


Chain C from PDB  Type:PROTEIN  Length:135
 aligned with Q76SB0_HHV8 | Q76SB0 from UniProtKB/TrEMBL  Length:1162

    Alignment length:135
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143     
         Q76SB0_HHV8   1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQP 1148
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.....hhhhhhhhhhhhhhh.........eeeeeee..hhhhhhhhhh.....eee...ee............eeeeeee..hhhhhhhhhhhhhhhhh.......eeeeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2ypy C 1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQP 1148
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143     


Chain D from PDB  Type:PROTEIN  Length:135
 aligned with Q76SB0_HHV8 | Q76SB0 from UniProtKB/TrEMBL  Length:1162

    Alignment length:135
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143     
         Q76SB0_HHV8   1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQP 1148
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.....hhhhhhhhhhhhhhh.........eeeeeee..hhhhhhhhhh......ee...ee............eeeeeee..hhhhhhhhhhhhhhhhh.......eeeeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2ypy D 1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQP 1148
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143     


Chain E from PDB  Type:PROTEIN  Length:136
 aligned with Q76SB0_HHV8 | Q76SB0 from UniProtKB/TrEMBL  Length:1162

    Alignment length:136
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      
         Q76SB0_HHV8   1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQPG 1149
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.....hhhhhhhhhhhhhhh.........eeeeeee..hhhhhhhhhh......ee...ee............eeeeeee..hhhhhhhhhhhhhhhhh.......eeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2ypy E 1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQPG 1149
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      


Chain F from PDB  Type:PROTEIN  Length:134
 aligned with Q76SB0_HHV8 | Q76SB0 from UniProtKB/TrEMBL  Length:1162

    Alignment length:134
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143    
         Q76SB0_HHV8   1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQ 1147
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.....hhhhhhhhhhhhhhh.........eeeeeee..hhhhhhhhhh.....eee...ee............eeeeeee..hhhhhhhhhhhhhhhhh.......eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2ypy F 1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQ 1147
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143    


Chain G from PDB  Type:PROTEIN  Length:133
 aligned with Q76SB0_HHV8 | Q76SB0 from UniProtKB/TrEMBL  Length:1162

    Alignment length:133
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143   
         Q76SB0_HHV8   1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLT 1146
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.....hhhhhhhhhhh.............eeeeeee..hhhhhhhhhh.....eee...ee............eeeeeee..hhhhhhhhhhhhhhhhh.......eeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2ypy G 1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLT 1146
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143   


Chain H from PDB  Type:PROTEIN  Length:134
 aligned with Q76SB0_HHV8 | Q76SB0 from UniProtKB/TrEMBL  Length:1162

    Alignment length:134
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143    
         Q76SB0_HHV8   1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQ 1147
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.....hhhhhhhhhhhhhhh.........eeeeeee..hhhhhhhhhh......ee...ee............eeeeeee..hhhhhhhhhhhhhhhhh.......eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2ypy H 1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQ 1147
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143    


Chain I from PDB  Type:PROTEIN  Length:134
 aligned with Q76SB0_HHV8 | Q76SB0 from UniProtKB/TrEMBL  Length:1162

    Alignment length:134
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143    
         Q76SB0_HHV8   1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQ 1147
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.....hhhhhhhhhhhhhhh.........eeeeeee..hhhhhhhhhh.....eee...ee............eeeeeee..hhhhhhhhhhhhhhhhh.......eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2ypy I 1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQ 1147
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143    


Chain J from PDB  Type:PROTEIN  Length:134
 aligned with Q76SB0_HHV8 | Q76SB0 from UniProtKB/TrEMBL  Length:1162

    Alignment length:134
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143    
         Q76SB0_HHV8   1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQ 1147
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.....hhhhhhhhhhhhhhh.........eeeeeee..hhhhhhhhhh.....eee...ee............eeeeeee..hhhhhhhhhhhhhhhhh.......eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2ypy J 1014 YQQPPVPYRQIDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLTQ 1147
                                  1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2YPY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YPY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2YPY)

(-) Gene Ontology  (0, 0)

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    (no "Gene Ontology" information available for 2YPY)

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  Q76SB0_HHV8 | Q76SB0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q76SB0_HHV8 | Q76SB0: 4uzb 4uzc 5a76
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        Q76SB0_HHV8 | Q76SB0: 2ypz 2yq0

(-) Related Entries Specified in the PDB File

2ypz KSHV LANA (ORF73) C-TERMINAL DOMAIN, DECAMERIC RING: ORTHORHOMBIC CRYSTAL FORM
2yq0 KSHV LANA (ORF73) C-TERMINAL DOMAIN, OCTAMERIC RING: CUBIC CRYSTAL FORM
2yq1 MHV-68 LANA (ORF73) C-TERMINAL DOMAIN: TRICLINIC CRYSTAL FORM