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(-)Asym./Biol. Unit
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(-) Description

Title :  KSHV LANA (ORF73) C-TERMINAL DOMAIN MUTANT BOUND TO LBS1 DNA (R1039Q, R1040Q, K1055E, K1109A, D1110A, A1121E, K1138S, K1140D, K1141D)
 
Authors :  J. Hellert, J. Krausze, T. Luhrs
Date :  05 Sep 14  (Deposition) - 13 May 15  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.86
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Viral Protein-Dna Complex, Dna-Binding Domain, Origin-Binding Domain, Oligomerization Domain, Hhv-8, Gammaherpesvirus, Rhadinovirus, Primary Effusion Lymphoma, Multicentric Castleman'S Disease, Tumor Virus, Cancer (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hellert, M. Weidner-Glunde, J. Krausze, H. Lunsdorf, C. Ritter, T. F. Schulz, T. Luhrs
The 3D Structure Of Kaposi Sarcoma Herpesvirus Lana C- Terminal Domain Bound To Dna.
Proc. Natl. Acad. Sci. Usa V. 112 6694 2015
PubMed-ID: 25947153  |  Reference-DOI: 10.1073/PNAS.1421804112
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ORF 73
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-BASED
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: C-TERMINAL DOMAIN, RESIDUES 1008-1146
    Mutation: YES
    Organism Scientific: HUMAN HERPESVIRUS 8
    Organism Taxid: 37296
    Synonym: LATENCY-ASSOCIATED NUCLEAR ANTIGEN, LANA-1, KSHV LANA
 
Molecule 2 - LANA BINDING SITE 1 DNA
    Chains: C
    Organism Scientific: HUMAN HERPESVIRUS 8
    Organism Taxid: 37296
    Synthetic: YES
 
Molecule 3 - LANA BINDING SITE 1 DNA
    Chains: D
    Organism Scientific: HUMAN HERPESVIRUS 8
    Organism Taxid: 37296
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4UZB)

(-) Sites  (0, 0)

(no "Site" information available for 4UZB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UZB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UZB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UZB)

(-) Exons   (0, 0)

(no "Exon" information available for 4UZB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                          
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhh..hhhhhhhhhhhhhh.hhh.........eeeeeee..hhhhhhhhhh.....eee...ee............eeeeeee..hhhhhhhhhhhhhhhhh.......eeeeeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4uzb A 1010 PHPRYQQPPVPYRQIDDCPAKARPQHIFYQQFLGKDGRRDPKCQWEFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNAATSKKVQMARLEWEASHPLAGNLQSSIVSFDDPLPLT 1146
                                  1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139       


Chain B from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                          
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhh..hhhhhhhhhhhhhh.hhh.........eeeeeee..hhhhhhhhhh.....eee...ee............eeeeeee..hhhhhhhhhhhhhhhhh.......eeeeeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4uzb B 1010 PHPRYQQPPVPYRQIDDCPAKARPQHIFYQQFLGKDGRRDPKCQWEFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNAATSKKVQMARLEWEASHPLAGNLQSSIVSFDDPLPLT 1146
                                  1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139       


Chain C from PDB  Type:DNA  Length:20
                                                     
                4uzb C    2 CCCGCCCGGGCATGGGGCCG   21
                                    11        21


Chain D from PDB  Type:DNA  Length:20
                                                     
                4uzb D  -21 CGGCCCCATGCCCGGGCGGG   -2
                                   -12        -2
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UZB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UZB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UZB)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  ORF73_HHV8P | Q9QR71
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ORF73_HHV8P | Q9QR71: 4uzc
        Q76SB0_HHV8 | Q76SB0: 4uzc 5a76
UniProtKB/TrEMBL
        Q76SB0_HHV8 | Q76SB0: 2ypy 2ypz 2yq0

(-) Related Entries Specified in the PDB File

4uzc KSHV LANA (ORF73) C-TERMINAL DOMAIN, SPIRAL: HEXAGONAL CRYSTAL FORM