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(-) Description

Title :  KSHV LANA (ORF73) C-TERMINAL DOMAIN, OCTAMERIC RING: CUBIC CRYSTAL FORM
 
Authors :  J. Hellert, J. Krausze, T. Luhrs
Date :  02 Nov 12  (Deposition) - 13 Nov 13  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.91
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (8x)
Keywords :  Viral Protein, Latency-Associated Nuclear Antigen, Lana-1, Dna-Binding Domain, Origin-Binding Domain, Oligomerization Domain, Kaposi'S Sarcoma-Associated Herpesvirus, Gammaherpesvirus, Rhadinovirus, Primary Effusion Lymphoma, Multicentric Castleman'S Disease, Tumor Virus, Cancer, Murid Herpesvirus 4, Muhv-4, Murid Herpesvirus 68, Mhv-68 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hellert, M. Weidner-Glunde, J. Krausze, U. Richter, H. Adler, R. Fedorov, M. Pietrek, J. Ruckert, C. Ritter, T. F. Schulz, T. Luhrs
A Structural Basis For Brd2/4-Mediated Host Chromatin Interaction And Oligomer Assembly Of Kaposi Sarcoma- Associated Herpesvirus And Murine Gammaherpesvirus Lana Proteins.
Plos Pathog. V. 9 3640 2013
PubMed-ID: 24146614  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1003640

(-) Compounds

Molecule 1 - ORF 73
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET BASED
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN, RESIDUES 996-1153
    Organism Scientific: HUMAN HERPESVIRUS 8 TYPE M
    Organism Taxid: 435895
    Synonym: KSHV LANA

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (8x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1SO48Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:1032 , GLY A:1067 , LYS A:1070 , ARG A:1119 , ALA A:1129 , GLY A:1130BINDING SITE FOR RESIDUE SO4 A2147

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(-) Sequences/Alignments

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Chain A from PDB  Type:PROTEIN  Length:118
 aligned with Q76SB0_HHV8 | Q76SB0 from UniProtKB/TrEMBL  Length:1162

    Alignment length:123
                                  1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143   
         Q76SB0_HHV8   1024 IDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHPGPDQSPITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLT 1146
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh.........eeeeeee..hhhhhhhhhh......ee...ee....-----...eeeeeee..hhhhhhhhhhhhhhhhh.......eeeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                2yq0 A 1024 IDDCPAKARPQHIFYRRFLGKDGRRDPKCQWKFAVIFWGNDPYGLKKLSQAFQFGGVKAGPVSCLPHP-----PITYCVYVYCQNKDTSKKVQMARLAWEASHPLAGNLQSSIVKFKKPLPLT 1146
                                  1033      1043      1053      1063      1073      1083       | -   |  1103      1113      1123      1133      1143   
                                                                                            1091  1097
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q76SB0_HHV8 | Q76SB0: 4uzb 4uzc 5a76
UniProtKB/TrEMBL
        Q76SB0_HHV8 | Q76SB0: 2ypy 2ypz

(-) Related Entries Specified in the PDB File

2ypy KSHV LANA (ORF73) C-TERMINAL DOMAIN, DECAMERIC RING: MONOCLINIC CRYSTAL FORM
2ypz KSHV LANA (ORF73) C-TERMINAL DOMAIN, DECAMERIC RING: ORTHORHOMBIC CRYSTAL FORM
2yq1 MHV-68 LANA (ORF73) C-TERMINAL DOMAIN: TRICLINIC CRYSTAL FORM