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2YPY
Asym. Unit
Info
Asym.Unit (483 KB)
Biol.Unit 1 (97 KB)
Biol.Unit 2 (97 KB)
Biol.Unit 3 (97 KB)
Biol.Unit 4 (97 KB)
Biol.Unit 5 (96 KB)
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(1)
Title
:
KSHV LANA (ORF73) C-TERMINAL DOMAIN, DECAMERIC RING: MONOCLINIC CRYSTAL FORM
Authors
:
J. Hellert, J. Krausze, T. Luhrs
Date
:
02 Nov 12 (Deposition) - 13 Nov 13 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: G,H (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: E,F (1x)
Biol. Unit 5: I,J (1x)
Keywords
:
Viral Protein, Viral Protein N, Latency-Associated Nuclear Antigen, Lana-1, Dna-Binding Domain, Origin-Binding Domain, Oligomerization Domain, Kaposi'S Sarcoma-Associated Herpesvirus, Gammaherpesvirus, Rhadinovirus, Primary Effusion Lymphoma, Multicentric Castleman'S Disease, Tumor Virus, Cancer, Murid Herpesvirus 4, Muhv-4, Murid Herpesvirus 68, Mhv-68
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Hellert, M. Weidner-Glunde, J. Krausze, U. Richter, H. Adler, R. Fedorov, M. Pietrek, J. Ruckert, C. Ritter, T. F. Schulz, T. Luhrs
A Structural Basis For Brd2/4-Mediated Host Chromatin Interaction And Oligomer Assembly Of Kaposi Sarcoma-Associated Herpesvirus And Murine Gammaherpesvirus Lana Proteins.
Plos Pathog. V. 9 3640 2013
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Hetero Components
(1, 24)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
1x: CHLORIDE ION (CLx)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
24
Ligand/Ion
CHLORIDE ION
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:1140 , LYS A:1141 , GLN B:1116 , SER B:1135 , ILE B:1136
BINDING SITE FOR RESIDUE CL A 2148
02
AC2
SOFTWARE
ARG A:1119 , ALA A:1129 , GLY A:1130
BINDING SITE FOR RESIDUE CL A 2149
03
AC3
SOFTWARE
GLN A:1116 , SER A:1135 , ILE A:1136 , LYS B:1140 , LYS B:1141
BINDING SITE FOR RESIDUE CL B 2151
04
AC4
SOFTWARE
ARG B:1119 , ALA B:1129 , GLY B:1130 , HOH B:2003
BINDING SITE FOR RESIDUE CL B 2152
05
AC5
SOFTWARE
ARG B:1039
BINDING SITE FOR RESIDUE CL B 2153
06
AC6
SOFTWARE
GLY J:1067 , LYS J:1070
BINDING SITE FOR RESIDUE CL B 2154
07
AC7
SOFTWARE
GLN C:1116 , ILE C:1136 , LYS D:1141
BINDING SITE FOR RESIDUE CL C 2149
08
AC8
SOFTWARE
GLY C:1067 , ARG C:1119
BINDING SITE FOR RESIDUE CL C 2150
09
AC9
SOFTWARE
LYS C:1141 , GLN D:1116 , SER D:1135 , ILE D:1136
BINDING SITE FOR RESIDUE CL D 2149
10
BC1
SOFTWARE
HIS E:1126
BINDING SITE FOR RESIDUE CL D 2150
11
BC2
SOFTWARE
ARG D:1119 , ALA D:1129 , HOH D:2003
BINDING SITE FOR RESIDUE CL D 2151
12
BC3
SOFTWARE
GLN D:1034 , LYS D:1070 , HOH D:2002
BINDING SITE FOR RESIDUE CL D 2152
13
BC4
SOFTWARE
GLN E:1116 , SER E:1135 , ILE E:1136 , LYS F:1141
BINDING SITE FOR RESIDUE CL E 2150
14
BC5
SOFTWARE
ARG E:1119 , ALA E:1129 , GLY E:1130 , CL E:2152
BINDING SITE FOR RESIDUE CL E 2151
15
BC6
SOFTWARE
LYS E:1070 , TRP E:1122 , CL E:2151
BINDING SITE FOR RESIDUE CL E 2152
16
BC7
SOFTWARE
LYS E:1140 , LYS E:1141 , GLN F:1116 , SER F:1135 , ILE F:1136
BINDING SITE FOR RESIDUE CL F 2148
17
BC8
SOFTWARE
GLY F:1067 , ARG F:1119
BINDING SITE FOR RESIDUE CL F 2149
18
BC9
SOFTWARE
GLN G:1116 , ILE G:1136 , LYS H:1140 , LYS H:1141
BINDING SITE FOR RESIDUE CL G 2147
19
CC1
SOFTWARE
ARG G:1119 , ALA G:1129 , GLY G:1130
BINDING SITE FOR RESIDUE CL G 2148
20
CC2
SOFTWARE
LYS G:1140 , GLN H:1116 , SER H:1135 , ILE H:1136
BINDING SITE FOR RESIDUE CL H 2148
21
CC3
SOFTWARE
GLN I:1116 , ILE I:1136 , LYS J:1141
BINDING SITE FOR RESIDUE CL I 2148
22
CC4
SOFTWARE
LEU D:1128 , GLN I:1034 , LYS I:1070
BINDING SITE FOR RESIDUE CL I 2150
23
CC5
SOFTWARE
LYS I:1141 , GLN J:1116 , SER J:1135 , ILE J:1136
BINDING SITE FOR RESIDUE CL J 2148
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (483 KB)
Header - Asym.Unit
Biol.Unit 1 (97 KB)
Header - Biol.Unit 1
Biol.Unit 2 (97 KB)
Header - Biol.Unit 2
Biol.Unit 3 (97 KB)
Header - Biol.Unit 3
Biol.Unit 4 (97 KB)
Header - Biol.Unit 4
Biol.Unit 5 (96 KB)
Header - Biol.Unit 5
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