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Sequence, Chains, Asymmetric and Biological Units

Title KSHV LANA (ORF73) C-TERMINAL DOMAIN, DECAMERIC RING: MONOCLI CRYSTAL FORM
Keywords VIRAL PROTEIN, VIRAL PROTEIN N, LATENCY-ASSOCIATED NUCLEAR A LANA-1, DNA-BINDING DOMAIN, ORIGIN-BINDING DOMAIN, OLIGOMER DOMAIN, KAPOSI'S SARCOMA-ASSOCIATED HERPESVIRUS, GAMMAHERPE RHADINOVIRUS, PRIMARY EFFUSION LYMPHOMA, MULTICENTRIC CASTL DISEASE, TUMOR VIRUS, CANCER, MURID HERPESVIRUS 4, MUHV-4, HERPESVIRUS 68, MHV-68
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2YPY     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ORF 73  A 134 1079 0
2  Protein   ORF 73  B 136 1091 0
3  Protein   ORF 73  C 135 1086 0
4  Protein   ORF 73  D 135 1086 0
5  Protein   ORF 73  E 136 1091 0
6  Protein   ORF 73  F 134 1079 0
7  Protein   ORF 73  G 133 1070 0
8  Protein   ORF 73  H 134 1079 0
9  Protein   ORF 73  I 134 1079 0
10  Protein   ORF 73  J 134 1079 0
11  Ligand   ORF 73  A 2 0 2
12  Ligand   ORF 73  B 4 0 4
13  Ligand   ORF 73  C 2 0 2
14  Ligand   ORF 73  D 4 0 4
15  Ligand   ORF 73  E 3 0 3
16  Ligand   ORF 73  F 2 0 2
17  Ligand   ORF 73  G 2 0 2
18  Ligand   ORF 73  H 1 0 1
19  Ligand   ORF 73  I 3 0 3
20  Ligand   ORF 73  J 1 0 1
21 Water     149 0 149
total       1518 10819 173
Proteins
Unit 1 TYR1014 GLN1015 GLN1016 PRO1017 PRO1018 VAL1019 PRO1020 TYR1021 ARG1022 GLN1023 ILE1024 ASP1025 ASP1026 CYS1027 PRO1028 ALA1029 LYS1030 ALA1031 ARG1032 PRO1033 GLN1034 HIS1035 ILE1036 PHE1037 TYR1038 ARG1039 ARG1040 PHE1041 LEU1042 GLY1043 LYS1044 ASP1045 GLY1046 ARG1047 ARG1048 ASP1049 PRO1050 LYS1051 CYS1052 GLN1053 TRP1054 LYS1055 PHE1056 ALA1057 VAL1058 ILE1059 PHE1060 TRP1061 GLY1062 ASN1063 ASP1064 PRO1065 TYR1066 GLY1067 LEU1068 LYS1069 LYS1070 LEU1071 SER1072 GLN1073 ALA1074 PHE1075 GLN1076 PHE1077 GLY1078 GLY1079 VAL1080 LYS1081 ALA1082 GLY1083 PRO1084 VAL1085 SER1086 CYS1087 LEU1088 PRO1089 HIS1090 PRO1091 GLY1092 PRO1093 ASP1094 GLN1095 SER1096 PRO1097 ILE1098 THR1099 TYR1100 CYS1101 VAL1102 TYR1103 VAL1104 TYR1105 CYS1106 GLN1107 ASN1108 LYS1109 ASP1110 THR1111 SER1112 LYS1113 LYS1114 VAL1115 GLN1116 MET1117 ALA1118 ARG1119 LEU1120 ALA1121 TRP1122 GLU1123 ALA1124 SER1125 HIS1126 PRO1127 LEU1128 ALA1129 GLY1130 ASN1131 LEU1132 GLN1133 SER1134 SER1135 ILE1136 VAL1137 LYS1138 PHE1139 LYS1140 LYS1141 PRO1142 LEU1143 PRO1144 LEU1145 THR1146 GLN1147
Unit 2 TYR1014 GLN1015 GLN1016 PRO1017 PRO1018 VAL1019 PRO1020 TYR1021 ARG1022 GLN1023 ILE1024 ASP1025 ASP1026 CYS1027 PRO1028 ALA1029 LYS1030 ALA1031 ARG1032 PRO1033 GLN1034 HIS1035 ILE1036 PHE1037 TYR1038 ARG1039 ARG1040 PHE1041 LEU1042 GLY1043 LYS1044 ASP1045 GLY1046 ARG1047 ARG1048 ASP1049 PRO1050 LYS1051 CYS1052 GLN1053 TRP1054 LYS1055 PHE1056 ALA1057 VAL1058 ILE1059 PHE1060 TRP1061 GLY1062 ASN1063 ASP1064 PRO1065 TYR1066 GLY1067 LEU1068 LYS1069 LYS1070 LEU1071 SER1072 GLN1073 ALA1074 PHE1075 GLN1076 PHE1077 GLY1078 GLY1079 VAL1080 LYS1081 ALA1082 GLY1083 PRO1084 VAL1085 SER1086 CYS1087 LEU1088 PRO1089 HIS1090 PRO1091 GLY1092 PRO1093 ASP1094 GLN1095 SER1096 PRO1097 ILE1098 THR1099 TYR1100 CYS1101 VAL1102 TYR1103 VAL1104 TYR1105 CYS1106 GLN1107 ASN1108 LYS1109 ASP1110 THR1111 SER1112 LYS1113 LYS1114 VAL1115 GLN1116 MET1117 ALA1118 ARG1119 LEU1120 ALA1121 TRP1122 GLU1123 ALA1124 SER1125 HIS1126 PRO1127 LEU1128 ALA1129 GLY1130 ASN1131 LEU1132 GLN1133 SER1134 SER1135 ILE1136 VAL1137 LYS1138 PHE1139 LYS1140 LYS1141 PRO1142 LEU1143 PRO1144 LEU1145 THR1146 GLN1147 PRO1148 GLY1149
Unit 3 TYR1014 GLN1015 GLN1016 PRO1017 PRO1018 VAL1019 PRO1020 TYR1021 ARG1022 GLN1023 ILE1024 ASP1025 ASP1026 CYS1027 PRO1028 ALA1029 LYS1030 ALA1031 ARG1032 PRO1033 GLN1034 HIS1035 ILE1036 PHE1037 TYR1038 ARG1039 ARG1040 PHE1041 LEU1042 GLY1043 LYS1044 ASP1045 GLY1046 ARG1047 ARG1048 ASP1049 PRO1050 LYS1051 CYS1052 GLN1053 TRP1054 LYS1055 PHE1056 ALA1057 VAL1058 ILE1059 PHE1060 TRP1061 GLY1062 ASN1063 ASP1064 PRO1065 TYR1066 GLY1067 LEU1068 LYS1069 LYS1070 LEU1071 SER1072 GLN1073 ALA1074 PHE1075 GLN1076 PHE1077 GLY1078 GLY1079 VAL1080 LYS1081 ALA1082 GLY1083 PRO1084 VAL1085 SER1086 CYS1087 LEU1088 PRO1089 HIS1090 PRO1091 GLY1092 PRO1093 ASP1094 GLN1095 SER1096 PRO1097 ILE1098 THR1099 TYR1100 CYS1101 VAL1102 TYR1103 VAL1104 TYR1105 CYS1106 GLN1107 ASN1108 LYS1109 ASP1110 THR1111 SER1112 LYS1113 LYS1114 VAL1115 GLN1116 MET1117 ALA1118 ARG1119 LEU1120 ALA1121 TRP1122 GLU1123 ALA1124 SER1125 HIS1126 PRO1127 LEU1128 ALA1129 GLY1130 ASN1131 LEU1132 GLN1133 SER1134 SER1135 ILE1136 VAL1137 LYS1138 PHE1139 LYS1140 LYS1141 PRO1142 LEU1143 PRO1144 LEU1145 THR1146 GLN1147 PRO1148
Unit 4 TYR1014 GLN1015 GLN1016 PRO1017 PRO1018 VAL1019 PRO1020 TYR1021 ARG1022 GLN1023 ILE1024 ASP1025 ASP1026 CYS1027 PRO1028 ALA1029 LYS1030 ALA1031 ARG1032 PRO1033 GLN1034 HIS1035 ILE1036 PHE1037 TYR1038 ARG1039 ARG1040 PHE1041 LEU1042 GLY1043 LYS1044 ASP1045 GLY1046 ARG1047 ARG1048 ASP1049 PRO1050 LYS1051 CYS1052 GLN1053 TRP1054 LYS1055 PHE1056 ALA1057 VAL1058 ILE1059 PHE1060 TRP1061 GLY1062 ASN1063 ASP1064 PRO1065 TYR1066 GLY1067 LEU1068 LYS1069 LYS1070 LEU1071 SER1072 GLN1073 ALA1074 PHE1075 GLN1076 PHE1077 GLY1078 GLY1079 VAL1080 LYS1081 ALA1082 GLY1083 PRO1084 VAL1085 SER1086 CYS1087 LEU1088 PRO1089 HIS1090 PRO1091 GLY1092 PRO1093 ASP1094 GLN1095 SER1096 PRO1097 ILE1098 THR1099 TYR1100 CYS1101 VAL1102 TYR1103 VAL1104 TYR1105 CYS1106 GLN1107 ASN1108 LYS1109 ASP1110 THR1111 SER1112 LYS1113 LYS1114 VAL1115 GLN1116 MET1117 ALA1118 ARG1119 LEU1120 ALA1121 TRP1122 GLU1123 ALA1124 SER1125 HIS1126 PRO1127 LEU1128 ALA1129 GLY1130 ASN1131 LEU1132 GLN1133 SER1134 SER1135 ILE1136 VAL1137 LYS1138 PHE1139 LYS1140 LYS1141 PRO1142 LEU1143 PRO1144 LEU1145 THR1146 GLN1147 PRO1148
Unit 5 TYR1014 GLN1015 GLN1016 PRO1017 PRO1018 VAL1019 PRO1020 TYR1021 ARG1022 GLN1023 ILE1024 ASP1025 ASP1026 CYS1027 PRO1028 ALA1029 LYS1030 ALA1031 ARG1032 PRO1033 GLN1034 HIS1035 ILE1036 PHE1037 TYR1038 ARG1039 ARG1040 PHE1041 LEU1042 GLY1043 LYS1044 ASP1045 GLY1046 ARG1047 ARG1048 ASP1049 PRO1050 LYS1051 CYS1052 GLN1053 TRP1054 LYS1055 PHE1056 ALA1057 VAL1058 ILE1059 PHE1060 TRP1061 GLY1062 ASN1063 ASP1064 PRO1065 TYR1066 GLY1067 LEU1068 LYS1069 LYS1070 LEU1071 SER1072 GLN1073 ALA1074 PHE1075 GLN1076 PHE1077 GLY1078 GLY1079 VAL1080 LYS1081 ALA1082 GLY1083 PRO1084 VAL1085 SER1086 CYS1087 LEU1088 PRO1089 HIS1090 PRO1091 GLY1092 PRO1093 ASP1094 GLN1095 SER1096 PRO1097 ILE1098 THR1099 TYR1100 CYS1101 VAL1102 TYR1103 VAL1104 TYR1105 CYS1106 GLN1107 ASN1108 LYS1109 ASP1110 THR1111 SER1112 LYS1113 LYS1114 VAL1115 GLN1116 MET1117 ALA1118 ARG1119 LEU1120 ALA1121 TRP1122 GLU1123 ALA1124 SER1125 HIS1126 PRO1127 LEU1128 ALA1129 GLY1130 ASN1131 LEU1132 GLN1133 SER1134 SER1135 ILE1136 VAL1137 LYS1138 PHE1139 LYS1140 LYS1141 PRO1142 LEU1143 PRO1144 LEU1145 THR1146 GLN1147 PRO1148 GLY1149
Unit 6 TYR1014 GLN1015 GLN1016 PRO1017 PRO1018 VAL1019 PRO1020 TYR1021 ARG1022 GLN1023 ILE1024 ASP1025 ASP1026 CYS1027 PRO1028 ALA1029 LYS1030 ALA1031 ARG1032 PRO1033 GLN1034 HIS1035 ILE1036 PHE1037 TYR1038 ARG1039 ARG1040 PHE1041 LEU1042 GLY1043 LYS1044 ASP1045 GLY1046 ARG1047 ARG1048 ASP1049 PRO1050 LYS1051 CYS1052 GLN1053 TRP1054 LYS1055 PHE1056 ALA1057 VAL1058 ILE1059 PHE1060 TRP1061 GLY1062 ASN1063 ASP1064 PRO1065 TYR1066 GLY1067 LEU1068 LYS1069 LYS1070 LEU1071 SER1072 GLN1073 ALA1074 PHE1075 GLN1076 PHE1077 GLY1078 GLY1079 VAL1080 LYS1081 ALA1082 GLY1083 PRO1084 VAL1085 SER1086 CYS1087 LEU1088 PRO1089 HIS1090 PRO1091 GLY1092 PRO1093 ASP1094 GLN1095 SER1096 PRO1097 ILE1098 THR1099 TYR1100 CYS1101 VAL1102 TYR1103 VAL1104 TYR1105 CYS1106 GLN1107 ASN1108 LYS1109 ASP1110 THR1111 SER1112 LYS1113 LYS1114 VAL1115 GLN1116 MET1117 ALA1118 ARG1119 LEU1120 ALA1121 TRP1122 GLU1123 ALA1124 SER1125 HIS1126 PRO1127 LEU1128 ALA1129 GLY1130 ASN1131 LEU1132 GLN1133 SER1134 SER1135 ILE1136 VAL1137 LYS1138 PHE1139 LYS1140 LYS1141 PRO1142 LEU1143 PRO1144 LEU1145 THR1146 GLN1147
Unit 7 TYR1014 GLN1015 GLN1016 PRO1017 PRO1018 VAL1019 PRO1020 TYR1021 ARG1022 GLN1023 ILE1024 ASP1025 ASP1026 CYS1027 PRO1028 ALA1029 LYS1030 ALA1031 ARG1032 PRO1033 GLN1034 HIS1035 ILE1036 PHE1037 TYR1038 ARG1039 ARG1040 PHE1041 LEU1042 GLY1043 LYS1044 ASP1045 GLY1046 ARG1047 ARG1048 ASP1049 PRO1050 LYS1051 CYS1052 GLN1053 TRP1054 LYS1055 PHE1056 ALA1057 VAL1058 ILE1059 PHE1060 TRP1061 GLY1062 ASN1063 ASP1064 PRO1065 TYR1066 GLY1067 LEU1068 LYS1069 LYS1070 LEU1071 SER1072 GLN1073 ALA1074 PHE1075 GLN1076 PHE1077 GLY1078 GLY1079 VAL1080 LYS1081 ALA1082 GLY1083 PRO1084 VAL1085 SER1086 CYS1087 LEU1088 PRO1089 HIS1090 PRO1091 GLY1092 PRO1093 ASP1094 GLN1095 SER1096 PRO1097 ILE1098 THR1099 TYR1100 CYS1101 VAL1102 TYR1103 VAL1104 TYR1105 CYS1106 GLN1107 ASN1108 LYS1109 ASP1110 THR1111 SER1112 LYS1113 LYS1114 VAL1115 GLN1116 MET1117 ALA1118 ARG1119 LEU1120 ALA1121 TRP1122 GLU1123 ALA1124 SER1125 HIS1126 PRO1127 LEU1128 ALA1129 GLY1130 ASN1131 LEU1132 GLN1133 SER1134 SER1135 ILE1136 VAL1137 LYS1138 PHE1139 LYS1140 LYS1141 PRO1142 LEU1143 PRO1144 LEU1145 THR1146
Unit 8 TYR1014 GLN1015 GLN1016 PRO1017 PRO1018 VAL1019 PRO1020 TYR1021 ARG1022 GLN1023 ILE1024 ASP1025 ASP1026 CYS1027 PRO1028 ALA1029 LYS1030 ALA1031 ARG1032 PRO1033 GLN1034 HIS1035 ILE1036 PHE1037 TYR1038 ARG1039 ARG1040 PHE1041 LEU1042 GLY1043 LYS1044 ASP1045 GLY1046 ARG1047 ARG1048 ASP1049 PRO1050 LYS1051 CYS1052 GLN1053 TRP1054 LYS1055 PHE1056 ALA1057 VAL1058 ILE1059 PHE1060 TRP1061 GLY1062 ASN1063 ASP1064 PRO1065 TYR1066 GLY1067 LEU1068 LYS1069 LYS1070 LEU1071 SER1072 GLN1073 ALA1074 PHE1075 GLN1076 PHE1077 GLY1078 GLY1079 VAL1080 LYS1081 ALA1082 GLY1083 PRO1084 VAL1085 SER1086 CYS1087 LEU1088 PRO1089 HIS1090 PRO1091 GLY1092 PRO1093 ASP1094 GLN1095 SER1096 PRO1097 ILE1098 THR1099 TYR1100 CYS1101 VAL1102 TYR1103 VAL1104 TYR1105 CYS1106 GLN1107 ASN1108 LYS1109 ASP1110 THR1111 SER1112 LYS1113 LYS1114 VAL1115 GLN1116 MET1117 ALA1118 ARG1119 LEU1120 ALA1121 TRP1122 GLU1123 ALA1124 SER1125 HIS1126 PRO1127 LEU1128 ALA1129 GLY1130 ASN1131 LEU1132 GLN1133 SER1134 SER1135 ILE1136 VAL1137 LYS1138 PHE1139 LYS1140 LYS1141 PRO1142 LEU1143 PRO1144 LEU1145 THR1146 GLN1147
Unit 9 TYR1014 GLN1015 GLN1016 PRO1017 PRO1018 VAL1019 PRO1020 TYR1021 ARG1022 GLN1023 ILE1024 ASP1025 ASP1026 CYS1027 PRO1028 ALA1029 LYS1030 ALA1031 ARG1032 PRO1033 GLN1034 HIS1035 ILE1036 PHE1037 TYR1038 ARG1039 ARG1040 PHE1041 LEU1042 GLY1043 LYS1044 ASP1045 GLY1046 ARG1047 ARG1048 ASP1049 PRO1050 LYS1051 CYS1052 GLN1053 TRP1054 LYS1055 PHE1056 ALA1057 VAL1058 ILE1059 PHE1060 TRP1061 GLY1062 ASN1063 ASP1064 PRO1065 TYR1066 GLY1067 LEU1068 LYS1069 LYS1070 LEU1071 SER1072 GLN1073 ALA1074 PHE1075 GLN1076 PHE1077 GLY1078 GLY1079 VAL1080 LYS1081 ALA1082 GLY1083 PRO1084 VAL1085 SER1086 CYS1087 LEU1088 PRO1089 HIS1090 PRO1091 GLY1092 PRO1093 ASP1094 GLN1095 SER1096 PRO1097 ILE1098 THR1099 TYR1100 CYS1101 VAL1102 TYR1103 VAL1104 TYR1105 CYS1106 GLN1107 ASN1108 LYS1109 ASP1110 THR1111 SER1112 LYS1113 LYS1114 VAL1115 GLN1116 MET1117 ALA1118 ARG1119 LEU1120 ALA1121 TRP1122 GLU1123 ALA1124 SER1125 HIS1126 PRO1127 LEU1128 ALA1129 GLY1130 ASN1131 LEU1132 GLN1133 SER1134 SER1135 ILE1136 VAL1137 LYS1138 PHE1139 LYS1140 LYS1141 PRO1142 LEU1143 PRO1144 LEU1145 THR1146 GLN1147
Unit 10 TYR1014 GLN1015 GLN1016 PRO1017 PRO1018 VAL1019 PRO1020 TYR1021 ARG1022 GLN1023 ILE1024 ASP1025 ASP1026 CYS1027 PRO1028 ALA1029 LYS1030 ALA1031 ARG1032 PRO1033 GLN1034 HIS1035 ILE1036 PHE1037 TYR1038 ARG1039 ARG1040 PHE1041 LEU1042 GLY1043 LYS1044 ASP1045 GLY1046 ARG1047 ARG1048 ASP1049 PRO1050 LYS1051 CYS1052 GLN1053 TRP1054 LYS1055 PHE1056 ALA1057 VAL1058 ILE1059 PHE1060 TRP1061 GLY1062 ASN1063 ASP1064 PRO1065 TYR1066 GLY1067 LEU1068 LYS1069 LYS1070 LEU1071 SER1072 GLN1073 ALA1074 PHE1075 GLN1076 PHE1077 GLY1078 GLY1079 VAL1080 LYS1081 ALA1082 GLY1083 PRO1084 VAL1085 SER1086 CYS1087 LEU1088 PRO1089 HIS1090 PRO1091 GLY1092 PRO1093 ASP1094 GLN1095 SER1096 PRO1097 ILE1098 THR1099 TYR1100 CYS1101 VAL1102 TYR1103 VAL1104 TYR1105 CYS1106 GLN1107 ASN1108 LYS1109 ASP1110 THR1111 SER1112 LYS1113 LYS1114 VAL1115 GLN1116 MET1117 ALA1118 ARG1119 LEU1120 ALA1121 TRP1122 GLU1123 ALA1124 SER1125 HIS1126 PRO1127 LEU1128 ALA1129 GLY1130 ASN1131 LEU1132 GLN1133 SER1134 SER1135 ILE1136 VAL1137 LYS1138 PHE1139 LYS1140 LYS1141 PRO1142 LEU1143 PRO1144 LEU1145 THR1146 GLN1147
Ligands
Unit 11 CL2148 CL2149
Unit 12 CL2151 CL2152 CL2153 CL2154
Unit 13 CL2149 CL2150
Unit 14 CL2149 CL2150 CL2151 CL2152
Unit 15 CL2150 CL2151 CL2152
Unit 16 CL2148 CL2149
Unit 17 CL2147 CL2148
Unit 18 CL2148
Unit 19 CL2148 CL2149 CL2150
Unit 20 CL2148
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany