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(-) Description

Title :  RHO TRANSCRIPTION TERMINATION FACTOR/RNA COMPLEX
 
Authors :  C. E. Bogden, D. Fass, N. Bergman, M. D. Nichols, J. M. Berger
Date :  08 Nov 98  (Deposition) - 26 Apr 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,E  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Rho, Ob Fold, Single-Stranded Nucleic Acid Binding Domain, Protein/Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. E. Bogden, D. Fass, N. Bergman, M. D. Nichols, J. M. Berger
The Structural Basis For Terminator Recognition By The Rho Transcription Termination Factor.
Mol. Cell V. 3 487 1999
PubMed-ID: 10230401  |  Reference-DOI: 10.1016/S1097-2765(00)80476-1
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-R(P*CP*CP*C)-3'
    Chains: D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PET24B
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Strain: DH5A
 
Molecule 2 - 5'-R(P*CP*CP*CP*CP*CP*C)-3'
    Chains: E
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - RNA BINDING DOMAIN OF RHO TRANSCRIPTION TERMINATION FACTOR
    Chains: A, B, C
    Engineered: YES
    Fragment: N-TERMINAL RNA BINDING DOMAIN
    Synonym: RHO

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): A  D 
Biological Unit 2 (1x):  B  E
Biological Unit 3 (1x):   C  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2A8V)

(-) Sites  (0, 0)

(no "Site" information available for 2A8V)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2A8V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2A8V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2A8V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2A8V)

(-) Exons   (0, 0)

(no "Exon" information available for 2A8V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:118
 aligned with RHO_ECO57 | P0AG32 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
            RHO_ECO57     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d2a8va1 A:1-47                                 d2a8va2 A:48-118 Rho termination factor, RNA-binding domain             SCOP domains
               CATH domains 2a8vA01 A:1-47                                 2a8vA02 A:48-117 Nucleic acid-binding proteins                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...hhhhhhhhhhh....hhh..hhhhhhhhhhhhhh....eeeeeeeee.....eeee............eee.hhhhhhh......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2a8v A   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                    10        20        30        40        50        60        70        80        90       100       110        


Chain A from PDB  Type:PROTEIN  Length:118
 aligned with RHO_ECOL6 | P0AG31 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
            RHO_ECOL6     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d2a8va1 A:1-47                                 d2a8va2 A:48-118 Rho termination factor, RNA-binding domain             SCOP domains
               CATH domains 2a8vA01 A:1-47                                 2a8vA02 A:48-117 Nucleic acid-binding proteins                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...hhhhhhhhhhh....hhh..hhhhhhhhhhhhhh....eeeeeeeee.....eeee............eee.hhhhhhh......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2a8v A   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                    10        20        30        40        50        60        70        80        90       100       110        


Chain A from PDB  Type:PROTEIN  Length:118
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d2a8va1 A:1-47                                 d2a8va2 A:48-118 Rho termination factor, RNA-binding domain             SCOP domains
               CATH domains 2a8vA01 A:1-47                                 2a8vA02 A:48-117 Nucleic acid-binding proteins                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...hhhhhhhhhhh....hhh..hhhhhhhhhhhhhh....eeeeeeeee.....eeee............eee.hhhhhhh......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2a8v A   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                    10        20        30        40        50        60        70        80        90       100       110        


Chain A from PDB  Type:PROTEIN  Length:118
 aligned with RHO_SHIFL | P0AG33 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
            RHO_SHIFL     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d2a8va1 A:1-47                                 d2a8va2 A:48-118 Rho termination factor, RNA-binding domain             SCOP domains
               CATH domains 2a8vA01 A:1-47                                 2a8vA02 A:48-117 Nucleic acid-binding proteins                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...hhhhhhhhhhh....hhh..hhhhhhhhhhhhhh....eeeeeeeee.....eeee............eee.hhhhhhh......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2a8v A   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                    10        20        30        40        50        60        70        80        90       100       110        


Chain B from PDB  Type:PROTEIN  Length:118
 aligned with RHO_ECO57 | P0AG32 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
            RHO_ECO57     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d2a8vb1 B:1-47                                 d2a8vb2 B:48-118 Rho termination factor, RNA-binding domain             SCOP domains
               CATH domains 2a8vB01 B:1-47                                 2a8vB02 B:48-117 Nucleic acid-binding proteins                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhhhh....eeeeeeeee.....eeee............eee.hhhhhh........eeeeee.........eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2a8v B   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                    10        20        30        40        50        60        70        80        90       100       110        


Chain B from PDB  Type:PROTEIN  Length:118
 aligned with RHO_ECOL6 | P0AG31 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
            RHO_ECOL6     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d2a8vb1 B:1-47                                 d2a8vb2 B:48-118 Rho termination factor, RNA-binding domain             SCOP domains
               CATH domains 2a8vB01 B:1-47                                 2a8vB02 B:48-117 Nucleic acid-binding proteins                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhhhh....eeeeeeeee.....eeee............eee.hhhhhh........eeeeee.........eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2a8v B   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                    10        20        30        40        50        60        70        80        90       100       110        


Chain B from PDB  Type:PROTEIN  Length:118
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d2a8vb1 B:1-47                                 d2a8vb2 B:48-118 Rho termination factor, RNA-binding domain             SCOP domains
               CATH domains 2a8vB01 B:1-47                                 2a8vB02 B:48-117 Nucleic acid-binding proteins                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhhhh....eeeeeeeee.....eeee............eee.hhhhhh........eeeeee.........eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2a8v B   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                    10        20        30        40        50        60        70        80        90       100       110        


Chain B from PDB  Type:PROTEIN  Length:118
 aligned with RHO_SHIFL | P0AG33 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
            RHO_SHIFL     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d2a8vb1 B:1-47                                 d2a8vb2 B:48-118 Rho termination factor, RNA-binding domain             SCOP domains
               CATH domains 2a8vB01 B:1-47                                 2a8vB02 B:48-117 Nucleic acid-binding proteins                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhhhh....eeeeeeeee.....eeee............eee.hhhhhh........eeeeee.........eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2a8v B   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                    10        20        30        40        50        60        70        80        90       100       110        


Chain C from PDB  Type:PROTEIN  Length:118
 aligned with RHO_ECO57 | P0AG32 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
            RHO_ECO57     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d2a8vc1 C:1-47                                 d2a8vc2 C:48-118 Rho termination factor, RNA-binding domain             SCOP domains
               CATH domains 2a8vC01 C:1-47                                 2a8vC02 C:48-117 Nucleic acid-binding proteins                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhhhh.....eeeeeeee.....eeee............eee.hhhhhh.......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2a8v C   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                    10        20        30        40        50        60        70        80        90       100       110        


Chain C from PDB  Type:PROTEIN  Length:118
 aligned with RHO_ECOL6 | P0AG31 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
            RHO_ECOL6     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d2a8vc1 C:1-47                                 d2a8vc2 C:48-118 Rho termination factor, RNA-binding domain             SCOP domains
               CATH domains 2a8vC01 C:1-47                                 2a8vC02 C:48-117 Nucleic acid-binding proteins                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhhhh.....eeeeeeee.....eeee............eee.hhhhhh.......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2a8v C   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                    10        20        30        40        50        60        70        80        90       100       110        


Chain C from PDB  Type:PROTEIN  Length:118
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d2a8vc1 C:1-47                                 d2a8vc2 C:48-118 Rho termination factor, RNA-binding domain             SCOP domains
               CATH domains 2a8vC01 C:1-47                                 2a8vC02 C:48-117 Nucleic acid-binding proteins                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhhhh.....eeeeeeee.....eeee............eee.hhhhhh.......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2a8v C   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                    10        20        30        40        50        60        70        80        90       100       110        


Chain C from PDB  Type:PROTEIN  Length:118
 aligned with RHO_SHIFL | P0AG33 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
            RHO_SHIFL     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d2a8vc1 C:1-47                                 d2a8vc2 C:48-118 Rho termination factor, RNA-binding domain             SCOP domains
               CATH domains 2a8vC01 C:1-47                                 2a8vC02 C:48-117 Nucleic acid-binding proteins                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhhhh.....eeeeeeee.....eeee............eee.hhhhhh.......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2a8v C   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                    10        20        30        40        50        60        70        80        90       100       110        


Chain D from PDB  Type:RNA  Length:3
                                   
                 2a8v D   1 CCC   3


Chain E from PDB  Type:RNA  Length:6
                                      
                 2a8v E   1 CCCCCC   6
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 6)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2A8V)

(-) Gene Ontology  (14, 44)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (RHO_SHIFL | P0AG33)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0008186    RNA-dependent ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain A,B,C   (RHO_ECOLI | P0AG30)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0008186    RNA-dependent ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain A,B,C   (RHO_ECOL6 | P0AG31)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0008186    RNA-dependent ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain A,B,C   (RHO_ECO57 | P0AG32)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0008186    RNA-dependent ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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  2a8v
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  RHO_ECOL6 | P0AG31
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  RHO_SHIFL | P0AG33
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RHO_ECO57 | P0AG32: 1a62 1a63 1a8v 5jji 5jjk 5jjl
        RHO_ECOL6 | P0AG31: 1a62 1a63 1a8v
        RHO_ECOLI | P0AG30: 1a62 1a63 1a8v 1pv4 1pvo 1xpo 1xpr 1xpu 2ht1 3ice 5jji 5jjk 5jjl
        RHO_SHIFL | P0AG33: 1a62 1a63 1a8v

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2A8V)