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(-) Description

Title :  STRUCTURAL MECHANISM OF INHIBITION OF THE RHO TRANSCRIPTION TERMINATION FACTOR BY THE ANTIBIOTIC 5A-FORMYLBICYCLOMYCIN (FB)
 
Authors :  E. Skordalakes, A. P. Brogan, B. S. Park, H. Kohn, J. M. Berger
Date :  09 Oct 04  (Deposition) - 02 Nov 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.15
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,J,K,L,M
Biol. Unit 1:  A,G  (1x)
Biol. Unit 2:  B,M  (1x)
Biol. Unit 3:  C,H  (1x)
Biol. Unit 4:  D,J  (1x)
Biol. Unit 5:  E,K  (1x)
Biol. Unit 6:  F,L  (1x)
Keywords :  Rho; 5A-Formylbicyclomycin; Fb; Atpgammas, Transcription-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Skordalakes, A. P. Brogan, B. S. Park, H. Kohn, J. M. Berger
Structural Mechanism Of Inhibition Of The Rho Transcription Termination Factor By The Antibiotic Bicyclomycin
Structure V. 13 99 2005
PubMed-ID: 15642265  |  Reference-DOI: 10.1016/J.STR.2004.10.013

(-) Compounds

Molecule 1 - 5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3'
    Chains: G, M, H, J, K, L
    Engineered: YES
    Other Details: SSRNA
    Synthetic: YES
 
Molecule 2 - RHO TRANSCRIPTION TERMINATION FACTOR
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHJKLM
Biological Unit 1 (1x): A     G     
Biological Unit 2 (1x):  B         M
Biological Unit 3 (1x):   C    H    
Biological Unit 4 (1x):    D    J   
Biological Unit 5 (1x):     E    K  
Biological Unit 6 (1x):      F    L 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric Unit (3, 17)
No.NameCountTypeFull Name
1AGS6Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2FB5Ligand/Ion5A-FORMYLBICYCLOMYCIN
3MG6Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1AGS1Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2FB-1Ligand/Ion5A-FORMYLBICYCLOMYCIN
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1AGS1Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2FB-1Ligand/Ion5A-FORMYLBICYCLOMYCIN
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1AGS1Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2FB-1Ligand/Ion5A-FORMYLBICYCLOMYCIN
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1AGS1Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2FB-1Ligand/Ion5A-FORMYLBICYCLOMYCIN
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1AGS1Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2FB-1Ligand/Ion5A-FORMYLBICYCLOMYCIN
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1AGS1Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2FB-1Ligand/Ion5A-FORMYLBICYCLOMYCIN
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:185 , GLU A:215 , AGS A:1600BINDING SITE FOR RESIDUE MG A 1601
02AC2SOFTWARETHR B:185 , AGS B:2600BINDING SITE FOR RESIDUE MG B 2601
03AC3SOFTWARELYS C:184 , THR C:185 , AGS C:3600 , FB C:3701BINDING SITE FOR RESIDUE MG C 3601
04AC4SOFTWARETHR D:185 , AGS D:4600 , FB D:4701BINDING SITE FOR RESIDUE MG D 4601
05AC5SOFTWARETHR E:185 , GLU E:211 , ARG E:212 , AGS E:5600 , FB E:5701BINDING SITE FOR RESIDUE MG E 5601
06AC6SOFTWARETHR F:185 , ARG F:212 , GLU F:215 , AGS F:6600 , FB F:6701BINDING SITE FOR RESIDUE MG F 6601
07AC7SOFTWARETHR A:158 , LYS A:181 , ALA A:182 , GLY A:183 , LYS A:184 , THR A:185 , MET A:186 , PHE A:355 , MG A:1601BINDING SITE FOR RESIDUE AGS A 1600
08AC8SOFTWAREARG A:366 , LYS A:367 , PRO B:180 , LYS B:181 , ALA B:182 , GLY B:183 , LYS B:184 , THR B:185 , MET B:186 , ARG B:212 , PHE B:355 , PRO B:356 , MG B:2601 , FB B:2701BINDING SITE FOR RESIDUE AGS B 2600
09AC9SOFTWAREARG B:366 , THR C:158 , PRO C:180 , LYS C:181 , ALA C:182 , GLY C:183 , LYS C:184 , THR C:185 , MET C:186 , MG C:3601 , FB C:3701BINDING SITE FOR RESIDUE AGS C 3600
10BC1SOFTWAREARG C:366 , LYS C:367 , PRO D:180 , LYS D:181 , ALA D:182 , GLY D:183 , LYS D:184 , THR D:185 , MET D:186 , ARG D:212 , PHE D:355 , MG D:4601 , FB D:4701BINDING SITE FOR RESIDUE AGS D 4600
11BC2SOFTWAREARG D:366 , THR E:158 , PRO E:180 , LYS E:181 , ALA E:182 , GLY E:183 , LYS E:184 , THR E:185 , MET E:186 , ARG E:212 , PHE E:355 , MG E:5601 , FB E:5701BINDING SITE FOR RESIDUE AGS E 5600
12BC3SOFTWAREARG E:366 , GLU E:369 , THR F:158 , PRO F:180 , LYS F:181 , ALA F:182 , GLY F:183 , LYS F:184 , THR F:185 , MET F:186 , ARG F:212 , PHE F:355 , MG F:6601 , FB F:6701BINDING SITE FOR RESIDUE AGS F 6600
13BC4SOFTWARELYS A:336 , GLY A:337 , PRO B:180 , LYS B:184 , ASP B:210 , GLU B:211 , ARG B:212 , ASP B:265 , SER B:266 , LEU B:320 , THR B:323 , AGS B:2600BINDING SITE FOR RESIDUE FB B 2701
14BC5SOFTWARELYS B:336 , GLY B:337 , LYS C:184 , ILE C:209 , ASP C:210 , GLU C:211 , ASP C:265 , SER C:266 , ARG C:269 , THR C:323 , AGS C:3600 , MG C:3601BINDING SITE FOR RESIDUE FB C 3701
15BC6SOFTWARELYS C:336 , GLY C:337 , ASP D:210 , GLU D:211 , ASP D:265 , SER D:266 , ARG D:269 , LEU D:320 , THR D:323 , AGS D:4600 , MG D:4601BINDING SITE FOR RESIDUE FB D 4701
16BC7SOFTWARELYS D:336 , GLY D:337 , LYS E:184 , ILE E:209 , ASP E:210 , GLU E:211 , ARG E:212 , ASP E:265 , SER E:266 , ARG E:269 , LEU E:320 , THR E:323 , AGS E:5600 , MG E:5601BINDING SITE FOR RESIDUE FB E 5701
17BC8SOFTWARELYS E:336 , GLY E:337 , ARG E:366 , LYS F:184 , ILE F:209 , ASP F:210 , GLU F:211 , ARG F:212 , ASP F:265 , SER F:266 , ARG F:269 , THR F:323 , AGS F:6600 , MG F:6601BINDING SITE FOR RESIDUE FB F 6701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XPR)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Phe E:355 -Pro E:356

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XPR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XPR)

(-) Exons   (0, 0)

(no "Exon" information available for 1XPR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:408
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1xpra1 A:1-47                                 d1xpra2 A:48-126 Rho termination factor, RNA-binding domain                      d1xpra3 A:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains 1xprA01 A:1-126 Nucleic acid-binding proteins                                                                                   1xprA02 A:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh.........hhhhhhhhhhhhhhhh...eeee.eeee.....eeee............eeehhhhhhhhh......eeeeee........eee....ee.......--..hhhhh............----.hhhhhhhhhhhhhh.......eeeee.....hhhhhhhhhhhhhh.....eeeeeeeeehhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhh....---..........hhhhhhhhhh.ee.....eeeeeeeee......hhhhhhhhhh.....eee.hhhhhhh..............hhhhhh.......hhhhhhh..........hhhhhhhhh...hhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xpr A   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRM----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
                                    10        20        30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180       190       200       210       220       230       240       250       260       270       280   |   290       300       310       320       330       340       350       360       370       380       390       400       410       
                                                                                                                                                       126  |               147  152                                                                                                                             280 284                                                                                                                                     
                                                                                                                                                          129                                                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:408
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1xprb1 B:1-47                                 d1xprb2 B:48-126 Rho termination factor, RNA-binding domain                      d1xprb3 B:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains 1xprB01 B:1-126 Nucleic acid-binding proteins                                                                                   1xprB02 B:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.hhhhhhhhhhh.........hhhhhhhhhhhh............eeee.....eeeehhhhh.......eeehhhhhh.........eeeee.........eeeeeeeee.......--..hhhhh........ee..----....hhhhhhhhhhh.ee...eeeeee....hhhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhh..---.ee..ee...hhhhhhhhh..ee.....eeeeeeeee....hhhhhhhhhhhh....eeee...................ee.........hhhhhhhhhhhh....hhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xpr B   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRM----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
                                    10        20        30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180       190       200       210       220       230       240       250       260       270       280   |   290       300       310       320       330       340       350       360       370       380       390       400       410       
                                                                                                                                                       126  |               147  152                                                                                                                             280 284                                                                                                                                     
                                                                                                                                                          129                                                                                                                                                                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:408
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1xprc1 C:1-47                                 d1xprc2 C:48-126 Rho termination factor, RNA-binding domain                      d1xprc3 C:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains 1xprC01 C:1-126 Nucleic acid-binding proteins                                                                                   1xprC02 C:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.hhhhhhhhhhhh........hhhhhhhhhhhh........ee..eeee.....eeeehhhhh.......eeehhhhhhhh.......eeeeee........eeeeeeeee.......--..hhhhh............----...hhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhh.....eeeeeeeeehhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhh..---..........hhhhhhhhh.........eeeeeeeee.....hhhhhhhhhhh....eeee.hhhhhh............ee.hhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xpr C   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRM----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
                                    10        20        30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180       190       200       210       220       230       240       250       260       270       280   |   290       300       310       320       330       340       350       360       370       380       390       400       410       
                                                                                                                                                       126  |               147  152                                                                                                                             280 284                                                                                                                                     
                                                                                                                                                          129                                                                                                                                                                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:408
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1xprd1 D:1-47                                 d1xprd2 D:48-126 Rho termination factor, RNA-binding domain                      d1xprd3 D:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains 1xprD01 D:1-126 Nucleic acid-binding proteins                                                                                   1xprD02 D:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhh.........eeeeee.....eeeehhhhh.......eeehhhhhhhh......eeeeeee.........eeeeeeee.......--..hhhhh............----.hhhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhh....---..........hhhhhhhhh..ee.....eeeeeeeee....hhhhhhhhhhhh....eeee.hhhhhhh...........ee.hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xpr D   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRM----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
                                    10        20        30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180       190       200       210       220       230       240       250       260       270       280   |   290       300       310       320       330       340       350       360       370       380       390       400       410       
                                                                                                                                                       126  |               147  152                                                                                                                             280 284                                                                                                                                     
                                                                                                                                                          129                                                                                                                                                                                                                                                                                                


Chain E from PDB  Type:PROTEIN  Length:407
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1xpre1 E:1-47                                 d1xpre2 E:48-126 Rho termination factor, RNA-binding domain                      d1xpre3 E:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains 1xprE01 E:1-126 Nucleic acid-binding proteins                                                                                   1xprE02 E:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh.hhhhhhhhhh.........hhhhhhhhhhhh........eeeeeeee.....eeee............eeehhhhhhh.......eeeeeee.........eeeeeeee.......--..hhhhh............----....hhhhhhhhhhh......eeeeee.......hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhh....----.........hhhhhhhhhh.ee.....eeeeeeeee....hhhhhhhhhhhh....eeee...................ee.......hhhhhhhhhhhh........hhhhhhhhhhhh....hhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xpr E   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRM----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA----LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
                                    10        20        30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180       190       200       210       220       230       240       250       260       270       280    |  290       300       310       320       330       340       350       360       370       380       390       400       410       
                                                                                                                                                       126  |               147  152                                                                                                                             280  285                                                                                                                                    
                                                                                                                                                          129                                                                                                                                                                                                                                                                                                


Chain F from PDB  Type:PROTEIN  Length:408
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1xprf1 F:1-47                                 d1xprf2 F:48-126 Rho termination factor, RNA-binding domain                      d1xprf3 F:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains 1xprF01 F:1-126 Nucleic acid-binding proteins                                                                                   1xprF02 F:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
           Pfam domains (1) ----Rho_N-1xprF01 F:5-47                       -Rho_RNA_bind-1xprF07 F:49-126                                                   -------------------    -----ATP-synt_ab-1xprF13 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----Rho_N-1xprF02 F:5-47                       -Rho_RNA_bind-1xprF08 F:49-126                                                   -------------------    -----ATP-synt_ab-1xprF14 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----Rho_N-1xprF03 F:5-47                       -Rho_RNA_bind-1xprF09 F:49-126                                                   -------------------    -----ATP-synt_ab-1xprF15 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----Rho_N-1xprF04 F:5-47                       -Rho_RNA_bind-1xprF10 F:49-126                                                   -------------------    -----ATP-synt_ab-1xprF16 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ----Rho_N-1xprF05 F:5-47                       -Rho_RNA_bind-1xprF11 F:49-126                                                   -------------------    -----ATP-synt_ab-1xprF17 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ----Rho_N-1xprF06 F:5-47                       -Rho_RNA_bind-1xprF12 F:49-126                                                   -------------------    -----ATP-synt_ab-1xprF18 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (6)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhh.......ee..eeee.....eeee............eeehhhhhhhh.......eeeeee........eeeeeeeee.......--..hhhhh............----.hhhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhh....eeeeeeeeehhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh...---.......hhhhhhhhhhhhh........eeeeeeeee....hhhhhhhhhhhh....eeee.hhhhhh.....................hhhhhhhhhhhhhh....hhhhhhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xpr F   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRM----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
                                    10        20        30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180       190       200       210       220       230       240       250       260       270       280   |   290       300       310       320       330       340       350       360       370       380       390       400       410       
                                                                                                                                                       126  |               147  152                                                                                                                             280 284                                                                                                                                     
                                                                                                                                                          129                                                                                                                                                                                                                                                                                                


Chain G from PDB  Type:RNA  Length:2
                                  
                 1xpr G   1 UC   2


Chain H from PDB  Type:RNA  Length:2
                                  
                 1xpr H   1 UC   2


Chain J from PDB  Type:RNA  Length:2
                                  
                 1xpr J   1 UC   2


Chain K from PDB  Type:RNA  Length:2
                                  
                 1xpr K   1 UC   2


Chain L from PDB  Type:RNA  Length:2
                                  
                 1xpr L   1 UC   2


Chain M from PDB  Type:RNA  Length:2
                                  
                 1xpr M   1 UC   2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 18)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (3, 18)

Asymmetric Unit
(-)
Clan: HeH (20)
(-)
Clan: OB (224)
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (23, 23)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (RHO_ECOLI | P0AG30)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0008186    RNA-dependent ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  1xpr
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  MEMA_METCA | P22869
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  RHO_ECOLI | P0AG30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MEMA_METCA | P22869: 1fyz 1fz0 1fz1 1fz2 1fz3 1fz4 1fz5 1fz6 1fz7 1fz8 1fz9 1fzh 1fzi 1mmo 1mty 1xmf 1xmg 1xmh 1xpo 1xpu 1xu3 1xu5 1xvb 1xvc 1xvd 1xve 1xvf 1xvg 4gam
        RHO_ECOLI | P0AG30: 1a62 1a63 1a8v 1pv4 1pvo 1xpo 1xpu 2a8v 2ht1 3ice 5jji 5jjk 5jjl

(-) Related Entries Specified in the PDB File

1xpo 1xpu