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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF THE RHO TRANSCRIPTION TERMINATION FACTOR IN COMPLEX WITH SINGLE STRANDED DNA
 
Authors :  E. Skordalakes, J. M. Berger
Date :  26 Jun 03  (Deposition) - 22 Jul 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,J,K,L
Keywords :  Protein-Ssdna Complex, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Skordalakes, J. M. Berger
Structure Of The Rho Transcription Terminator: Mechanism Of Mrna Recognition And Helicase Loading
Cell(Cambridge, Mass. ) V. 114 135 2003
PubMed-ID: 12859904  |  Reference-DOI: 10.1016/S0092-8674(03)00512-9

(-) Compounds

Molecule 1 - 5'-D(P*CP*C)-3'
    Chains: G, H, J, K, L
    Engineered: YES
    Other Details: RHO TRANSCRIPTION TERMINATION FACTOR IS AN ESSENTIAL GENE IN BACTERIA
    Synthetic: YES
 
Molecule 2 - TRANSCRIPTION TERMINATION FACTOR RHO
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: BACTERIAL TRANSCRIPTION TERMINATION
    Gene: RHO
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1234567891011
Asymmetric/Biological Unit : ABCDEFGHJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 93)

Asymmetric/Biological Unit (1, 93)
No.NameCountTypeFull Name
1MSE93Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1PV4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PV4)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys E:44 -Ser E:45

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PV4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1PV4)

(-) Exons   (0, 0)

(no "Exon" information available for 1PV4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:408
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1pv4a1 A:1-47                                 d1pv4a2 A:48-126 Rho termination factor, RNA-binding domain                      d1pv4a3 A:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains -1pv4A01 A:2-126 Nucleic acid-binding proteins                                                                                  1pv4A02 A:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.hhhhhhhhhhhh........hhhhhhhhhhhhh.......eeeeeeee.....eeeehhhhh.......eeehhhhhhhhh.....eeeeeee........eeeeeeeee.......--..hhhhh............----...hhhhhhhh..........eeeeee....hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhh..---.ee..ee...hhhhhhhhhhhee.....eeeeeeeee....hhhhhhhhhhh.....eeee.hhhhhhh......hhhhhee.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pv4 A   1 mNLTELKNTPVSELITLGENmGLENLARmRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRm----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTmLLQNIAQSIAYNHPDCVLmVLLIDERPEEVTEmQRLVKGEVVASTFDEPASRHVQVAEmVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKmDEVIYEEFKGTGNmELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKmWILRKIIHPmGEIDAmEFLINKLAmTKTNDDFFEmmK 417
                            |       10        20|       30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180     | 190       200    |  210       220       230       240    |  250       260       270       280   |   290       300       310       320      |330       340|      350       360       370       380       390     | 400    |  410    || 
                            |                  21-MSE  29-MSE                                                                                          126  |               147-MSE2                               186-MSE            205-MSE       219-MSE                   245-MSE                            280 284                                        327-MSE       341-MSE                                380-MSE   390-MSE |      405-MSE   415-MSE
                            1-MSE                                                                                                                         129                                                                                                                                                                                                                                                                        396-MSE             416-MSE


Chain B from PDB  Type:PROTEIN  Length:358
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:367
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI    51 GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1pv4b1 B:51-126 Rho termination factor, RNA-binding domain                   d1pv4b2 B:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains 1pv4B01 B:51-126 Nucleic acid-binding proteins                                1pv4B02 B:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.....eeeehhhhh.......eeehhhhhhhhh......eeeeee.........eeeeeeee.......--..hhhhh........ee..----.hhhhhhhhhhhhhh.ee...eeeeee....hhhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhh..---......hhhhhhhhhhhhhhhee.....eeeeeeeee....hhhhhhhhhhh.....eeee.hhhhhhh...........ee.hhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pv4 B  51 GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRm----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTmLLQNIAQSIAYNHPDCVLmVLLIDERPEEVTEmQRLVKGEVVASTFDEPASRHVQVAEmVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKmDEVIYEEFKGTGNmELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKmWILRKIIHPmGEIDAmEFLINKLAmTKTNDDFFEmmK 417
                                    60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180     | 190       200    |  210       220       230       240    |  250       260       270       280   |   290       300       310       320      |330       340|      350       360       370       380       390     | 400    |  410    || 
                                                                                                     126  |               147-MSE2                               186-MSE            205-MSE       219-MSE                   245-MSE                            280 284                                        327-MSE       341-MSE                                380-MSE   390-MSE |      405-MSE   415-MSE
                                                                                                        129                                                                                                                                                                                                                                                                        396-MSE             416-MSE


Chain C from PDB  Type:PROTEIN  Length:408
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1pv4c1 C:1-47                                 d1pv4c2 C:48-126 Rho termination factor, RNA-binding domain                      d1pv4c3 C:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains -1pv4C01 C:2-126 Nucleic acid-binding proteins                                                                                  1pv4C02 C:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh..hhhhhhhhhhhh........hhhhhhhhhhhh........eeeeeeee.....eeee............eeehhhhhhhh......eeeeeee.........eeeeeeee.......--..hhhhh............----..hhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhh..---......hhhhhhhhhhhhhhhee.....eeeeeeeee....hhhhhhhhhhhh....eeee.hhhhhhh......hhhhhee.hhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pv4 C   1 mNLTELKNTPVSELITLGENmGLENLARmRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRm----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTmLLQNIAQSIAYNHPDCVLmVLLIDERPEEVTEmQRLVKGEVVASTFDEPASRHVQVAEmVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKmDEVIYEEFKGTGNmELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKmWILRKIIHPmGEIDAmEFLINKLAmTKTNDDFFEmmK 417
                            |       10        20|       30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180     | 190       200    |  210       220       230       240    |  250       260       270       280   |   290       300       310       320      |330       340|      350       360       370       380       390     | 400    |  410    || 
                            |                  21-MSE  29-MSE                                                                                          126  |               147-MSE2                               186-MSE            205-MSE       219-MSE                   245-MSE                            280 284                                        327-MSE       341-MSE                                380-MSE   390-MSE |      405-MSE   415-MSE
                            1-MSE                                                                                                                         129                                                                                                                                                                                                                                                                        396-MSE             416-MSE


Chain D from PDB  Type:PROTEIN  Length:408
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1pv4d1 D:1-47                                 d1pv4d2 D:48-126 Rho termination factor, RNA-binding domain                      d1pv4d3 D:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains -1pv4D01 D:2-126 Nucleic acid-binding proteins                                                                                  1pv4D02 D:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.hhhhhhhhhhh.........hhhhhhhhhhhhh.......eeeeeeee.....eeee............eeehhhhhhhhh.....eeeeeee.........eeeeeeee.......--..hhhhh............----..hhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhh..---......hhhhhhhhhhhhhhhee.....eeeeeeeee....hhhhhhhhhh......eeee.hhhhhhh......hhhhhee.hhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pv4 D   1 mNLTELKNTPVSELITLGENmGLENLARmRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRm----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTmLLQNIAQSIAYNHPDCVLmVLLIDERPEEVTEmQRLVKGEVVASTFDEPASRHVQVAEmVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKmDEVIYEEFKGTGNmELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKmWILRKIIHPmGEIDAmEFLINKLAmTKTNDDFFEmmK 417
                            |       10        20|       30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180     | 190       200    |  210       220       230       240    |  250       260       270       280   |   290       300       310       320      |330       340|      350       360       370       380       390     | 400    |  410    || 
                            |                  21-MSE  29-MSE                                                                                          126  |               147-MSE2                               186-MSE            205-MSE       219-MSE                   245-MSE                            280 284                                        327-MSE       341-MSE                                380-MSE   390-MSE |      405-MSE   415-MSE
                            1-MSE                                                                                                                         129                                                                                                                                                                                                                                                                        396-MSE             416-MSE


Chain E from PDB  Type:PROTEIN  Length:407
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1pv4e1 E:1-47                                 d1pv4e2 E:48-126 Rho termination factor, RNA-binding domain                      d1pv4e3 E:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains -1pv4E01 E:2-126 Nucleic acid-binding proteins                                                                                  1pv4E02 E:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.hhhhhhhhhhhh........hhhhhhhhhhhhh.......eeeeeeee.....eeeehhhhh.......eeehhhhhhhh......eeeeeee.........eeeeeeee.......--..hhhhh........ee..----...hhhhhhhhhhhh.ee...eeeeee....hhhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhh..----.........hhhhhhhhhh.ee.....eeeeeeeee....hhhhhhhhhhhh....eeee.hhhhhhh......hhhhhee.hhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pv4 E   1 mNLTELKNTPVSELITLGENmGLENLARmRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRm----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTmLLQNIAQSIAYNHPDCVLmVLLIDERPEEVTEmQRLVKGEVVASTFDEPASRHVQVAEmVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA----LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKmDEVIYEEFKGTGNmELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKmWILRKIIHPmGEIDAmEFLINKLAmTKTNDDFFEmmK 417
                            |       10        20|       30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180     | 190       200    |  210       220       230       240    |  250       260       270       280    |  290       300       310       320      |330       340|      350       360       370       380       390     | 400    |  410    || 
                            |                  21-MSE  29-MSE                                                                                          126  |               147-MSE2                               186-MSE            205-MSE       219-MSE                   245-MSE                            280  285                                       327-MSE       341-MSE                                380-MSE   390-MSE |      405-MSE   415-MSE
                            1-MSE                                                                                                                         129                                                                                                                                                                                                                                                                        396-MSE             416-MSE


Chain F from PDB  Type:PROTEIN  Length:408
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1pv4f1 F:1-47                                 d1pv4f2 F:48-126 Rho termination factor, RNA-binding domain                      d1pv4f3 F:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains -1pv4F01 F:2-126 Nucleic acid-binding proteins                                                                                  1pv4F02 F:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
           Pfam domains (1) ----Rho_N-1pv4F01 F:5-47                       -Rho_RNA_bind-1pv4F06 F:49-126                                                   -------------------    -----ATP-synt_ab-1pv4F12 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----Rho_N-1pv4F02 F:5-47                       -Rho_RNA_bind-1pv4F07 F:49-126                                                   -------------------    -----ATP-synt_ab-1pv4F13 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----Rho_N-1pv4F03 F:5-47                       -Rho_RNA_bind-1pv4F08 F:49-126                                                   -------------------    -----ATP-synt_ab-1pv4F14 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----Rho_N-1pv4F04 F:5-47                       -Rho_RNA_bind-1pv4F09 F:49-126                                                   -------------------    -----ATP-synt_ab-1pv4F15 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ----Rho_N-1pv4F05 F:5-47                       -Rho_RNA_bind-1pv4F10 F:49-126                                                   -------------------    -----ATP-synt_ab-1pv4F16 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ------------------------------------------------Rho_RNA_bind-1pv4F11 F:49-126                                                   -------------------    -----ATP-synt_ab-1pv4F17 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (6)
         Sec.struct. author .hhhhhhh.hhhhhhhhhhhh........hhhhhhhhhhhhh.......eeeeeeee.....eeeehhhhh.......eeehhhhhhhhh.....eeeeeee.........eeeeeeee.......--...............ee..----...hhhhhhhhhhhh.ee...eeeeee....hhhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhh..---......hhhhhhhhhhhhh..ee.....eeeeeeeee....hhhhhhhhhhhh....eeee.hhhhhhh...........ee.hhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pv4 F   1 mNLTELKNTPVSELITLGENmGLENLARmRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRm----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTmLLQNIAQSIAYNHPDCVLmVLLIDERPEEVTEmQRLVKGEVVASTFDEPASRHVQVAEmVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKmDEVIYEEFKGTGNmELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKmWILRKIIHPmGEIDAmEFLINKLAmTKTNDDFFEmmK 417
                            |       10        20|       30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180     | 190       200    |  210       220       230       240    |  250       260       270       280   |   290       300       310       320      |330       340|      350       360       370       380       390     | 400    |  410    || 
                            |                  21-MSE  29-MSE                                                                                          126  |               147-MSE2                               186-MSE            205-MSE       219-MSE                   245-MSE                            280 284                                        327-MSE       341-MSE                                380-MSE   390-MSE |      405-MSE   415-MSE
                            1-MSE                                                                                                                         129                                                                                                                                                                                                                                                                        396-MSE             416-MSE


Chain G from PDB  Type:DNA  Length:2
                                  
                 1pv4 G   3 CC   4


Chain H from PDB  Type:DNA  Length:2
                                  
                 1pv4 H   3 CC   4


Chain J from PDB  Type:DNA  Length:2
                                  
                 1pv4 J   3 CC   4


Chain K from PDB  Type:DNA  Length:2
                                  
                 1pv4 K   3 CC   4


Chain L from PDB  Type:DNA  Length:2
                                  
                 1pv4 L   3 CC   4
   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (3, 17)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (3, 17)

Asymmetric/Biological Unit
(-)
Clan: HeH (20)
(-)
Clan: OB (224)
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (RHO_ECOLI | P0AG30)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0008186    RNA-dependent ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RHO_ECOLI | P0AG30: 1a62 1a63 1a8v 1pvo 1xpo 1xpr 1xpu 2a8v 2ht1 3ice 5jji 5jjk 5jjl

(-) Related Entries Specified in the PDB File

1pvo X-RAY CRYSTAL STRUCTURE OF RHO TRANSCRIPTION TERMINATION FACTOR IN COMPLEX WITH SSRNA SUBSTRATE AND ANPPNP