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(-) Description

Title :  STRUCTURE OF THE RNA-BINDING DOMAIN OF THE RHO TRANSCRIPTION TERMINATOR
 
Authors :  D. Fass, C. Bogden, J. M. Berger
Date :  28 Mar 98  (Deposition) - 04 May 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transcription Termination, Rna-Binding, Terminator, Rho Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. E. Bogden, D. Fass, N. Bergman, M. D. Nichols, J. M. Berger
The Structural Basis For Terminator Recognition By The Rho Transcription Termination Factor.
Mol. Cell V. 3 487 1999
PubMed-ID: 10230401  |  Reference-DOI: 10.1016/S1097-2765(00)80476-1
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRANSCRIPTION TERMINATION FACTOR RHO
    Cell Line: BL21
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24B
    Expression System Strain: BL21 PLYSS
    Expression System Taxid: 562
    Fragment: RNA-BINDING DOMAIN
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Strain: DH5-ALPHA

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CU2Ligand/IonCOPPER (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:-1 , HIS A:0 , HOH A:120 , GLU B:47BINDING SITE FOR RESIDUE CU A 119
2AC2SOFTWAREGLU A:47 , GLY B:-1 , HIS B:0 , HOH B:121BINDING SITE FOR RESIDUE CU B 119

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1A8V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1A8V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1A8V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1A8V)

(-) Exons   (0, 0)

(no "Exon" information available for 1A8V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:115
 aligned with RHO_ECO57 | P0AG32 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:120
                              1                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118
            RHO_ECO57     - --MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d1a8va1 A:-1-47                                  d1a8va2 A:48-118 Rho      termination factor, RNA-binding domain        SCOP domains
               CATH domains 1a8vA01 A:-1-47                                  1a8vA02 A:48-118 Nucl     eic acid-binding proteins                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh...hhhhhhhhhh.....hhh..hhhhhhhhhhhhhhh...eeeeeeeee.....eeee..-----.hhh.eee.hhhhhhh......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1a8v A  -1 GHMNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSA-----AGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                     8        18        28        38        48        58        68     |  78        88        98       108       118
                                                                                                68    74                                            


Chain A from PDB  Type:PROTEIN  Length:115
 aligned with RHO_ECOL6 | P0AG31 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:120
                              1                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118
            RHO_ECOL6     - --MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d1a8va1 A:-1-47                                  d1a8va2 A:48-118 Rho      termination factor, RNA-binding domain        SCOP domains
               CATH domains 1a8vA01 A:-1-47                                  1a8vA02 A:48-118 Nucl     eic acid-binding proteins                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh...hhhhhhhhhh.....hhh..hhhhhhhhhhhhhhh...eeeeeeeee.....eeee..-----.hhh.eee.hhhhhhh......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1a8v A  -1 GHMNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSA-----AGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                     8        18        28        38        48        58        68     |  78        88        98       108       118
                                                                                                68    74                                            


Chain A from PDB  Type:PROTEIN  Length:115
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:120
                              1                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118
            RHO_ECOLI     - --MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d1a8va1 A:-1-47                                  d1a8va2 A:48-118 Rho      termination factor, RNA-binding domain        SCOP domains
               CATH domains 1a8vA01 A:-1-47                                  1a8vA02 A:48-118 Nucl     eic acid-binding proteins                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh...hhhhhhhhhh.....hhh..hhhhhhhhhhhhhhh...eeeeeeeee.....eeee..-----.hhh.eee.hhhhhhh......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1a8v A  -1 GHMNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSA-----AGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                     8        18        28        38        48        58        68     |  78        88        98       108       118
                                                                                                68    74                                            


Chain A from PDB  Type:PROTEIN  Length:115
 aligned with RHO_SHIFL | P0AG33 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:120
                              1                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118
            RHO_SHIFL     - --MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d1a8va1 A:-1-47                                  d1a8va2 A:48-118 Rho      termination factor, RNA-binding domain        SCOP domains
               CATH domains 1a8vA01 A:-1-47                                  1a8vA02 A:48-118 Nucl     eic acid-binding proteins                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh...hhhhhhhhhh.....hhh..hhhhhhhhhhhhhhh...eeeeeeeee.....eeee..-----.hhh.eee.hhhhhhh......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1a8v A  -1 GHMNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSA-----AGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                     8        18        28        38        48        58        68     |  78        88        98       108       118
                                                                                                68    74                                            


Chain B from PDB  Type:PROTEIN  Length:116
 aligned with RHO_ECO57 | P0AG32 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:120
                              1                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118
            RHO_ECO57     - --MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d1a8vb1 B:-1-47                                  d1a8vb2 B:48-118 Rho t    ermination factor, RNA-binding domain         SCOP domains
               CATH domains 1a8vB01 B:-1-47                                  1a8vB02 B:48-117 Nucle    ic acid-binding proteins                    - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh...hhhhhhhhhhh....hhh..hhhhhhhhhhhhhhh...eeeeeeeee.....eeee...----.....eee.hhhhhhh......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1a8v B  -1 GHMNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSAD----AGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                     8        18        28        38        48        58        68|    |  78        88        98       108       118
                                                                                                 69   74                                            


Chain B from PDB  Type:PROTEIN  Length:116
 aligned with RHO_ECOL6 | P0AG31 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:120
                              1                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118
            RHO_ECOL6     - --MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d1a8vb1 B:-1-47                                  d1a8vb2 B:48-118 Rho t    ermination factor, RNA-binding domain         SCOP domains
               CATH domains 1a8vB01 B:-1-47                                  1a8vB02 B:48-117 Nucle    ic acid-binding proteins                    - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh...hhhhhhhhhhh....hhh..hhhhhhhhhhhhhhh...eeeeeeeee.....eeee...----.....eee.hhhhhhh......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1a8v B  -1 GHMNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSAD----AGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                     8        18        28        38        48        58        68|    |  78        88        98       108       118
                                                                                                 69   74                                            


Chain B from PDB  Type:PROTEIN  Length:116
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:120
                              1                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118
            RHO_ECOLI     - --MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d1a8vb1 B:-1-47                                  d1a8vb2 B:48-118 Rho t    ermination factor, RNA-binding domain         SCOP domains
               CATH domains 1a8vB01 B:-1-47                                  1a8vB02 B:48-117 Nucle    ic acid-binding proteins                    - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh...hhhhhhhhhhh....hhh..hhhhhhhhhhhhhhh...eeeeeeeee.....eeee...----.....eee.hhhhhhh......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1a8v B  -1 GHMNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSAD----AGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                     8        18        28        38        48        58        68|    |  78        88        98       108       118
                                                                                                 69   74                                            


Chain B from PDB  Type:PROTEIN  Length:116
 aligned with RHO_SHIFL | P0AG33 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:120
                              1                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118
            RHO_SHIFL     - --MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
               SCOP domains d1a8vb1 B:-1-47                                  d1a8vb2 B:48-118 Rho t    ermination factor, RNA-binding domain         SCOP domains
               CATH domains 1a8vB01 B:-1-47                                  1a8vB02 B:48-117 Nucle    ic acid-binding proteins                    - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh...hhhhhhhhhhh....hhh..hhhhhhhhhhhhhhh...eeeeeeeee.....eeee...----.....eee.hhhhhhh......eeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1a8v B  -1 GHMNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSAD----AGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118
                                     8        18        28        38        48        58        68|    |  78        88        98       108       118
                                                                                                 69   74
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1A8V)

(-) Gene Ontology  (14, 44)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (RHO_ECO57 | P0AG32)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0008186    RNA-dependent ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain A,B   (RHO_ECOL6 | P0AG31)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0008186    RNA-dependent ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain A,B   (RHO_ECOLI | P0AG30)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0008186    RNA-dependent ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain A,B   (RHO_SHIFL | P0AG33)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0008186    RNA-dependent ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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  1a8v
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  RHO_ECO57 | P0AG32
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  RHO_ECOL6 | P0AG31
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  RHO_ECOLI | P0AG30
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  RHO_SHIFL | P0AG33
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  RHO_ECO57 | P0AG32
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  RHO_ECOL6 | P0AG31
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  RHO_ECOLI | P0AG30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RHO_ECO57 | P0AG32: 1a62 1a63 2a8v 5jji 5jjk 5jjl
        RHO_ECOL6 | P0AG31: 1a62 1a63 2a8v
        RHO_ECOLI | P0AG30: 1a62 1a63 1pv4 1pvo 1xpo 1xpr 1xpu 2a8v 2ht1 3ice 5jji 5jjk 5jjl
        RHO_SHIFL | P0AG33: 1a62 1a63 2a8v

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1A8V)