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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF RHO TRANSCRIPTION TERMINATION FACTOR IN COMPLEX WITH SSRNA SUBSTRATE AND ANPPNP
 
Authors :  E. Skordalakes, J. M. Berger
Date :  27 Jun 03  (Deposition) - 22 Jul 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,J,K,L
Keywords :  Rho-Anppnp-Ssrna Complex, Transcription-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. Skordalakes, J. M. Berger
Structure Of The Rho Transcription Terminator: Mechanism Of Mrna Recognition And Helicase Loading
Cell(Cambridge, Mass. ) V. 114 135 2003
PubMed-ID: 12859904  |  Reference-DOI: 10.1016/S0092-8674(03)00512-9

(-) Compounds

Molecule 1 - 5'-R(P*UP*C)-3'
    ChainsG, H, J, K, L
    EngineeredYES
    SyntheticYES
 
Molecule 2 - TRANSCRIPTION TERMINATION FACTOR RHO
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System VectorPET24B
    Expression System Vector TypePLASMID
    GeneRHO
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562

 Structural Features

(-) Chains, Units

  1234567891011
Asymmetric/Biological Unit ABCDEFGHJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1ANP6Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:181 , ALA A:182 , GLY A:183 , LYS A:184 , THR A:185 , MET A:186 , PHE A:355BINDING SITE FOR RESIDUE ANP A 601
2AC2SOFTWAREARG A:366 , LYS B:181 , GLY B:183 , LYS B:184 , THR B:185 , MET B:186 , ARG B:212 , PHE B:355BINDING SITE FOR RESIDUE ANP B 602
3AC3SOFTWAREARG B:366 , PRO C:180 , LYS C:181 , ALA C:182 , GLY C:183 , LYS C:184 , THR C:185 , MET C:186 , ARG C:212 , PHE C:355BINDING SITE FOR RESIDUE ANP C 603
4AC4SOFTWAREARG C:366 , LYS D:181 , GLY D:183 , LYS D:184 , THR D:185 , MET D:186 , PHE D:355BINDING SITE FOR RESIDUE ANP D 604
5AC5SOFTWAREARG D:366 , PRO E:180 , LYS E:181 , ALA E:182 , GLY E:183 , LYS E:184 , THR E:185 , MET E:186 , ARG E:212 , PHE E:355BINDING SITE FOR RESIDUE ANP E 605
6AC6SOFTWAREARG E:366 , GLU E:369 , LYS F:181 , ALA F:182 , GLY F:183 , LYS F:184 , THR F:185 , MET F:186 , PHE F:355BINDING SITE FOR RESIDUE ANP F 606

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PVO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1PVO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PVO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1PVO)

(-) Exons   (0, 0)

(no "Exon" information available for 1PVO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:408
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1pvoa1 A:1-47                                 d1pvoa2 A:48-126 Rho termination factor, RNA-binding domain                      d1pvoa3 A:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains 1pvoA01 A:1-126 Nucleic acid-binding proteins                                                                                   1pvoA02 A:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.......eeeeeeee.....eeeehhhhh.......eeehhhhhhhh......eeeeeee........eeeeeeeee.......--..hhhhh........ee..----...hhhhhhhhhhhh.ee...eeeeee....hhhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhh..---..........hhhhhhhhhhhee.....eeeeeeeee....hhhhhhhhhhh.....eeee.hhhhhhh......hhhhhee.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pvo A   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRM----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
                                    10        20        30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180       190       200       210       220       230       240       250       260       270       280   |   290       300       310       320       330       340       350       360       370       380       390       400       410       
                                                                                                                                                       126  |               147  152                                                                                                                             280 284                                                                                                                                     
                                                                                                                                                          129                                                                                                                                                                                                                                                                                                

Chain B from PDB  Type:PROTEIN  Length:358
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:367
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI    51 GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1pvob1 B:51-126 Rho termination factor, RNA-binding domain                   d1pvob2 B:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains 1pvoB01 B:51-126 Nucleic acid-binding proteins                                1pvoB02 B:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.....eeeehhhhh.......eeehhhhhh.......ee....ee.........ee.............--..hhhhh........ee..----..hhhhhhhhhhhhh.ee...eeeeee....hhhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhh..---......hhhhhhhhhhhhhhhee.....eeeeeeeee....hhhhhhhhhhh.....eeee.hhhhhhh......hhhhhee.hhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pvo B  51 GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRM----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
                                    60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180       190       200       210       220       230       240       250       260       270       280   |   290       300       310       320       330       340       350       360       370       380       390       400       410       
                                                                                                     126  |               147  152                                                                                                                             280 284                                                                                                                                     
                                                                                                        129                                                                                                                                                                                                                                                                                                

Chain C from PDB  Type:PROTEIN  Length:408
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1pvoc1 C:1-47                                 d1pvoc2 C:48-126 Rho termination factor, RNA-binding domain                      d1pvoc3 C:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains 1pvoC01 C:1-126 Nucleic acid-binding proteins                                                                                   1pvoC02 C:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.hhhhhhhhhhhh........hhhhhhhhhhhhh........eeeeeee.....eeeehhhhh.......eeehhhhhhhh......eeee.ee.........ee....ee.......--..hhhhh............----..hhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhh...---.ee..ee...hhhhhhhhhhhee.....eeeeeeeee....hhhhhhhhhhhh....eeee.hhhhhhh...........ee.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pvo C   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRM----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
                                    10        20        30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180       190       200       210       220       230       240       250       260       270       280   |   290       300       310       320       330       340       350       360       370       380       390       400       410       
                                                                                                                                                       126  |               147  152                                                                                                                             280 284                                                                                                                                     
                                                                                                                                                          129                                                                                                                                                                                                                                                                                                

Chain D from PDB  Type:PROTEIN  Length:408
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1pvod1 D:1-47                                 d1pvod2 D:48-126 Rho termination factor, RNA-binding domain                      d1pvod3 D:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains 1pvoD01 D:1-126 Nucleic acid-binding proteins                                                                                   1pvoD02 D:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.hhhhhhhhhhh.........hhhhhhhhhhhhhh......eeeeeeee.....eeeehhhhh.......eeehhhhhhhhh.....eeeeeee.........eeeeeeee.......--..hhhhh............----..hhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhh..---......hhhhhhhhhhhhhh.ee.....eeeeeeeee....hhhhhhhhhh......eeee.hhhhhhh...........ee.hhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pvo D   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRM----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
                                    10        20        30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180       190       200       210       220       230       240       250       260       270       280   |   290       300       310       320       330       340       350       360       370       380       390       400       410       
                                                                                                                                                       126  |               147  152                                                                                                                             280 284                                                                                                                                     
                                                                                                                                                          129                                                                                                                                                                                                                                                                                                

Chain E from PDB  Type:PROTEIN  Length:407
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1pvoe1 E:1-47                                 d1pvoe2 E:48-126 Rho termination factor, RNA-binding domain                      d1pvoe3 E:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains 1pvoE01 E:1-126 Nucleic acid-binding proteins                                                                                   1pvoE02 E:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhhhhh........eeeeeeee.....eeeehhhhh.......eeehhhhhhhh......eeeeeee.........eeeeeeee.......--..hhhhh........ee..----...hhhhhhhhhhhh.ee...eeeeee....hhhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhh..----.........hhhhhhhhhh.ee.....eeeeeeeee....hhhhhhhhhh......eeee.hhhhhhh......hhhhhee.hhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pvo E   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRM----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA----LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
                                    10        20        30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180       190       200       210       220       230       240       250       260       270       280    |  290       300       310       320       330       340       350       360       370       380       390       400       410       
                                                                                                                                                       126  |               147  152                                                                                                                             280  285                                                                                                                                    
                                                                                                                                                          129                                                                                                                                                                                                                                                                                                

Chain F from PDB  Type:PROTEIN  Length:408
 aligned with RHO_ECOLI | P0AG30 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       
            RHO_ECOLI     1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
               SCOP domains d1pvof1 F:1-47                                 d1pvof2 F:48-126 Rho termination factor, RNA-binding domain                      d1pvof3 F:129-417 T    ranscription termination factor Rho, ATPase domain                                                                                                                                                                                                                         SCOP domains
               CATH domains 1pvoF01 F:1-126 Nucleic acid-binding proteins                                                                                   1pvoF02 F:129-417 P    -loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                        CATH domains
           Pfam domains (1) ----Rho_N-1pvoF01 F:5-47                       -Rho_RNA_bind-1pvoF06 F:49-126                                                   -------------------    -----ATP-synt_ab-1pvoF12 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----Rho_N-1pvoF02 F:5-47                       -Rho_RNA_bind-1pvoF07 F:49-126                                                   -------------------    -----ATP-synt_ab-1pvoF13 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----Rho_N-1pvoF03 F:5-47                       -Rho_RNA_bind-1pvoF08 F:49-126                                                   -------------------    -----ATP-synt_ab-1pvoF14 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----Rho_N-1pvoF04 F:5-47                       -Rho_RNA_bind-1pvoF09 F:49-126                                                   -------------------    -----ATP-synt_ab-1pvoF15 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ----Rho_N-1pvoF05 F:5-47                       -Rho_RNA_bind-1pvoF10 F:49-126                                                   -------------------    -----ATP-synt_ab-1pvoF16 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ------------------------------------------------Rho_RNA_bind-1pvoF11 F:49-126                                                   -------------------    -----ATP-synt_ab-1pvoF17 F:157-365                                                                                                                                                                                    ---------------------------------------------------- Pfam domains (6)
         Sec.struct. author .hhhhhhh.hhhhhhhhhhh.........hhhhhhhhhhhhhh......eeeeeeee.....eeee............eeehhhhhhhhh.....eeeeeee.........ee.............--...................----..hhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhh..---..........hhhhhhhhh..ee.....eeeeeeeee....hhhhhhhhhh......eeee.hhhhhhh......hhhhhee.hhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhh.....hhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pvo F   1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN--NKILFENLTPLHANSRLRM----GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA---VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417
                                    10        20        30        40        50        60        70        80        90       100       110       120     | 130       140      |  - |     160       170       180       190       200       210       220       230       240       250       260       270       280   |   290       300       310       320       330       340       350       360       370       380       390       400       410       
                                                                                                                                                       126  |               147  152                                                                                                                             280 284                                                                                                                                     
                                                                                                                                                          129                                                                                                                                                                                                                                                                                                

Chain G from PDB  Type:RNA  Length:2
                                  
                 1pvo G   1 UC   2

Chain H from PDB  Type:RNA  Length:2
                                  
                 1pvo H   1 UC   2

Chain J from PDB  Type:RNA  Length:2
                                  
                 1pvo J   1 UC   2

Chain K from PDB  Type:RNA  Length:2
                                  
                 1pvo K   1 UC   2

Chain L from PDB  Type:RNA  Length:2
                                  
                 1pvo L   1 UC   2

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 Classification and Annotation

(-) SCOP Domains  (3, 17)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (3, 17)

Asymmetric/Biological Unit
(-)
Clan: HeH (20)
(-)
Clan: OB (224)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (RHO_ECOLI | P0AG30)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0008186    RNA-dependent ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RHO_ECOLI | P0AG301a62 1a63 1a8v 1pv4 1xpo 1xpr 1xpu 2a8v 2ht1 3ice 5jji 5jjk 5jjl

(-) Related Entries Specified in the PDB File

1pv4 TRANSCRIPTION TERMINATION FACTOR RHO COMPLEX WITH SSDNA