Chain A from PDB Type:PROTEIN Length:349
aligned with VINT_LAMBD | P03700 from UniProtKB/Swiss-Prot Length:356
Alignment length:349
17 27 37 47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247 257 267 277 287 297 307 317 327 337 347
VINT_LAMBD 8 ERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK 356
SCOP domains ---d1z1ga1 A:11-59 ---------------------------------------------------------------------------------------------------------------------d1z1ga2 A:177-355 Integrase (Int) - SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........eee.....eeee......eee...hhhhhhhhhhhhhhhh.........hhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh......hhhhh............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhh.ee..eeeee......eeeee...ee....eehhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh..................ee.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1z1g A 8 ERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYmSKIKAIRRGLPDAPLEDITTKEIAAmLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAmELAVVTGQRVGDLCEmKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISmKETLDKCKEILGGETIIASTRREPLSSGTVSRYFmRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTmASQFRDDRGREWDKIEIK 356
17 27 37 47 57 67 77 87 97 | 107 117 127 137 147 157 167 177 187 197 | 207 217 | 227 237 247 257 267 277 287 | 297 307 317 327 337| 347
101-MSE 127-MSE 203-MSE 219-MSE 255-MSE 290-MSE 338-MSE
Chain B from PDB Type:PROTEIN Length:336
aligned with VINT_LAMBD | P03700 from UniProtKB/Swiss-Prot Length:356
Alignment length:347
19 29 39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349
VINT_LAMBD 10 RDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK 356
SCOP domains -d1z1gb1 B:11-59 ---------------------------------------------------------------------------------------------------------------------d1z1gb2 B:177-355 Integrase (Int) - SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......eee.....eeee......eee...hhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh......hhhhh............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhh.ee..eeeee......eeeee...ee....eehhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh.....-----------........ Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1z1g B 10 RDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYmSKIKAIRRGLPDAPLEDITTKEIAAmLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAmELAVVTGQRVGDLCEmKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISmKETLDKCKEILGGETIIASTRREPLSSGTVSRYFmRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDT-----------EWDKIEIK 356
19 29 39 49 59 69 79 89 99 | 109 119 129 139 149 159 169 179 189 199 | 209 219 229 239 249 | 259 269 279 289| 299 309 319 329 | - 349
101-MSE 127-MSE 203-MSE 219-MSE 255-MSE 290-MSE 337 349
Chain C from PDB Type:PROTEIN Length:349
aligned with VINT_LAMBD | P03700 from UniProtKB/Swiss-Prot Length:356
Alignment length:349
17 27 37 47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247 257 267 277 287 297 307 317 327 337 347
VINT_LAMBD 8 ERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK 356
SCOP domains ---d1z1gc1 C:11-59 ---------------------------------------------------------------------------------------------------------------------d1z1gc2 C:177-355 Integrase (Int) - SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........eee.....eeee......eee...hhhhhhhhhhhhhhhh.......hhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh......hhhhh............hhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhh.ee..eeeee......eeeee...ee....eehhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh......................... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1z1g C 8 ERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYmSKIKAIRRGLPDAPLEDITTKEIAAmLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAmELAVVTGQRVGDLCEmKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISmKETLDKCKEILGGETIIASTRREPLSSGTVSRYFmRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTmASQFRDDRGREWDKIEIK 356
17 27 37 47 57 67 77 87 97 | 107 117 127 137 147 157 167 177 187 197 | 207 217 | 227 237 247 257 267 277 287 | 297 307 317 327 337| 347
101-MSE 127-MSE 203-MSE 219-MSE 255-MSE 290-MSE 338-MSE
Chain D from PDB Type:PROTEIN Length:336
aligned with VINT_LAMBD | P03700 from UniProtKB/Swiss-Prot Length:356
Alignment length:347
19 29 39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349
VINT_LAMBD 10 RDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK 356
SCOP domains -d1z1gd1 D:11-59 ---------------------------------------------------------------------------------------------------------------------d1z1gd2 D:177-355 Integrase (Int) - SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) Phage_integ_N-1z1gD09 D:10-76 ---Phage_integr_N-1z1gD05 D:80-158 -------------------Phage_integrase-1z1gD01 D:178-349 ------- Pfam domains (1)
Pfam domains (2) Phage_integ_N-1z1gD10 D:10-76 ---Phage_integr_N-1z1gD06 D:80-158 -------------------Phage_integrase-1z1gD02 D:178-349 ------- Pfam domains (2)
Pfam domains (3) Phage_integ_N-1z1gD11 D:10-76 ---Phage_integr_N-1z1gD07 D:80-158 -------------------Phage_integrase-1z1gD03 D:178-349 ------- Pfam domains (3)
Pfam domains (4) Phage_integ_N-1z1gD12 D:10-76 ---Phage_integr_N-1z1gD08 D:80-158 -------------------Phage_integrase-1z1gD04 D:178-349 ------- Pfam domains (4)
Sec.struct. author ......eee.....eeee......eee...hhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh......hhhhh............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhh.ee..eeeee......eeeee...ee....eehhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh......-----------..ee.... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1z1g D 10 RDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYmSKIKAIRRGLPDAPLEDITTKEIAAmLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAmELAVVTGQRVGDLCEmKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISmKETLDKCKEILGGETIIASTRREPLSSGTVSRYFmRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDT-----------EWDKIEIK 356
19 29 39 49 59 69 79 89 99 | 109 119 129 139 149 159 169 179 189 199 | 209 219 229 239 249 | 259 269 279 289| 299 309 319 329 | - 349
101-MSE 127-MSE 203-MSE 219-MSE 255-MSE 290-MSE 337 349
Chain E from PDB Type:DNA Length:24
1z1g E 1 ACAGGTCACTATCAGTCAAAATAC 24
10 20
Chain F from PDB Type:DNA Length:25
1z1g F 1 GGTATTTTGACTGATAGTGACCTGT 25
10 20
Chain G from PDB Type:DNA Length:24
1z1g G 1 ACAGGTCACTATCAGTCAAAATAC 24
10 20
Chain H from PDB Type:DNA Length:25
1z1g H 1 GGTATTTTGACTGATAGTGACCTGT 25
10 20
Chain I from PDB Type:DNA Length:29
1z1g I 1 AACTCTGCTTTTTACAACAAAGTTGGATC 29
10 20
Chain J from PDB Type:DNA Length:29
1z1g J 1 CGCTCAAGTTTATATTAAAAAGCAGAGTT 29
10 20
Chain K from PDB Type:DNA Length:29
1z1g K 1 TTGCCAGCTTTATTATATAAACTTGAGCG 29
10 20
Chain L from PDB Type:DNA Length:29
1z1g L 1 GATCCAACTTTGTTGAATAAAGCTGGCAA 29
10 20
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |