Chain A from PDB Type:PROTEIN Length:349
aligned with VINT_LAMBD | P03700 from UniProtKB/Swiss-Prot Length:356
Alignment length:349
17 27 37 47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247 257 267 277 287 297 307 317 327 337 347
VINT_LAMBD 8 ERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK 356
SCOP domains ---d1z1ba1 A:11-59 --------------d1z1ba2 A:74-356 Integrase (Int) SCOP domains
CATH domains 1z1bA01 A:8-64 Classic Zinc Finger ---------1z1bA02 A:74-174 [code=1.10.150.130, no name defined] --1z1bA03 A:177-355 Intergrase catalytic core - CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........eeee...eeeee......eeeee.hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhh.ee..eeeee......eeeee...ee....eehhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.......ee.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1z1b A 8 ERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQyRDDRGREWDKIEIK 356
17 27 37 47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247 257 267 277 287 297 307 317 327 337 | 347
342-PTR
Chain B from PDB Type:PROTEIN Length:350
aligned with VINT_LAMBD | P03700 from UniProtKB/Swiss-Prot Length:356
Alignment length:350
16 26 36 46 56 66 76 86 96 106 116 126 136 146 156 166 176 186 196 206 216 226 236 246 256 266 276 286 296 306 316 326 336 346 356
VINT_LAMBD 7 HERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK 356
SCOP domains ----d1z1bb1 B:11-59 --------------d1z1bb2 B:74-356 Integrase (Int) SCOP domains
CATH domains 1z1bB01 B:7-64 Classic Zinc Finger ---------1z1bB02 B:74-174 [code=1.10.150.130, no name defined] --1z1bB03 B:177-355 Intergrase catalytic core - CATH domains
Pfam domains (1) Phage_integ_N-1z1bB05 B:7-76 ---Phage_integr_N-1z1bB03 B:80-158 -------------------Phage_integrase-1z1bB01 B:178-349 ------- Pfam domains (1)
Pfam domains (2) Phage_integ_N-1z1bB06 B:7-76 ---Phage_integr_N-1z1bB04 B:80-158 -------------------Phage_integrase-1z1bB02 B:178-349 ------- Pfam domains (2)
Sec.struct. author .........eee.....eeee......eeeee.hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.ee..eeeee......eeeee...ee....eehhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh............. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1z1b B 7 HERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQyRDDRGREWDKIEIK 356
16 26 36 46 56 66 76 86 96 106 116 126 136 146 156 166 176 186 196 206 216 226 236 246 256 266 276 286 296 306 316 326 336 | 346 356
342-PTR
Chain C from PDB Type:DNA Length:11
1z1b C 3 CGTTCAGCTTT 13
12
Chain D from PDB Type:DNA Length:18
1z1b D 14 TTTATACTAAGTTGGCAT 31
23
Chain E from PDB Type:DNA Length:29
1z1b E 36 ATGCCAACTTAGTATAAAAAAGCTGAACG 64
45 55
Chain F from PDB Type:DNA Length:25
1z1b F 1 ACAGGTCACTATCAGTCAAAATACC 25
10 20
Chain G from PDB Type:DNA Length:25
1z1b G 28 GGTATTTTGACTGATAGTGACCTGT 52
37 47
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(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |